miRNA display CGI


Results 1 - 20 of 280 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23803 5' -63.2 NC_005261.1 + 137882 0.66 0.567958
Target:  5'- gGGCCaGCgGU----GCCGCCGCCgCCCCu -3'
miRNA:   3'- -CUGG-CGgCAgcacUGGUGGCGG-GGGG- -5'
23803 5' -63.2 NC_005261.1 + 137778 0.66 0.596804
Target:  5'- gGGCgCGCCccCG-GGCC-CCGCCgCCCg -3'
miRNA:   3'- -CUG-GCGGcaGCaCUGGuGGCGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 137665 0.69 0.423237
Target:  5'- --gCGCCG-CGcGACCccggggccccccACCGCCCCUCg -3'
miRNA:   3'- cugGCGGCaGCaCUGG------------UGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 135577 0.66 0.567958
Target:  5'- gGACC-CCaUCGUGGCCACgGCCggCgCCg -3'
miRNA:   3'- -CUGGcGGcAGCACUGGUGgCGG--GgGG- -5'
23803 5' -63.2 NC_005261.1 + 134222 0.68 0.484133
Target:  5'- cGGCgGCCGgcagcgucggCGUGGCgCACgCGCCCUgCg -3'
miRNA:   3'- -CUGgCGGCa---------GCACUG-GUG-GCGGGGgG- -5'
23803 5' -63.2 NC_005261.1 + 133292 0.66 0.596804
Target:  5'- -cCCGCC-UCGUGGCCGCCaaggacgacugGCUgCUCg -3'
miRNA:   3'- cuGGCGGcAGCACUGGUGG-----------CGGgGGG- -5'
23803 5' -63.2 NC_005261.1 + 133158 0.69 0.423237
Target:  5'- cGCCGCCGUCGgcgUCGCCGCCgacaaCCg -3'
miRNA:   3'- cUGGCGGCAGCacuGGUGGCGGgg---GG- -5'
23803 5' -63.2 NC_005261.1 + 133100 0.69 0.423237
Target:  5'- aGGCCGCCGUCa--ACCGCgCGgCCUUCCa -3'
miRNA:   3'- -CUGGCGGCAGcacUGGUG-GC-GGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 132968 0.67 0.558417
Target:  5'- uGGCCGCCuUCGUcGCCgcgcACCGCgaCCCg -3'
miRNA:   3'- -CUGGCGGcAGCAcUGG----UGGCGggGGG- -5'
23803 5' -63.2 NC_005261.1 + 132402 0.69 0.398578
Target:  5'- aGGCCGCCGcCGacgccUGGCC-CgCGCaCCCCUg -3'
miRNA:   3'- -CUGGCGGCaGC-----ACUGGuG-GCG-GGGGG- -5'
23803 5' -63.2 NC_005261.1 + 132106 0.66 0.571786
Target:  5'- cGGCCGCgacgCGcUCGUGGagcgggacgcgcggcUgACCGCCCUCCu -3'
miRNA:   3'- -CUGGCG----GC-AGCACU---------------GgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 132066 0.69 0.406695
Target:  5'- cGGCCGagGUCGcGGCCGCCGUCgCCg -3'
miRNA:   3'- -CUGGCggCAGCaCUGGUGGCGGgGGg -5'
23803 5' -63.2 NC_005261.1 + 132021 0.75 0.178602
Target:  5'- gGGCCGCCGUcacggaCGUGGCCGCC-CUggaCCCCg -3'
miRNA:   3'- -CUGGCGGCA------GCACUGGUGGcGG---GGGG- -5'
23803 5' -63.2 NC_005261.1 + 131823 0.68 0.493178
Target:  5'- cGCCGCCG-CuUGACgCGgCGCCCgCCu -3'
miRNA:   3'- cUGGCGGCaGcACUG-GUgGCGGGgGG- -5'
23803 5' -63.2 NC_005261.1 + 131760 0.68 0.493178
Target:  5'- cGCCgGCCGgcgCGgcgGGCgCGCCGCUgggCCCCg -3'
miRNA:   3'- cUGG-CGGCa--GCa--CUG-GUGGCGG---GGGG- -5'
23803 5' -63.2 NC_005261.1 + 131634 0.71 0.309622
Target:  5'- -cCCGCCG-CGagGACCGacggGCCCCCCg -3'
miRNA:   3'- cuGGCGGCaGCa-CUGGUgg--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131562 0.74 0.20107
Target:  5'- -gUCGCCGUCGcc-CgGCUGCCCCCCg -3'
miRNA:   3'- cuGGCGGCAGCacuGgUGGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131420 0.74 0.210725
Target:  5'- cGCUGCCGgcagCGgcGCCGgCGCCCCCCu -3'
miRNA:   3'- cUGGCGGCa---GCacUGGUgGCGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131389 0.72 0.289886
Target:  5'- uGCgUGCCGUCaccGCCACCgaGCCCCCCg -3'
miRNA:   3'- cUG-GCGGCAGcacUGGUGG--CGGGGGG- -5'
23803 5' -63.2 NC_005261.1 + 131098 0.67 0.511495
Target:  5'- --aCGCCGUCGccgcGCCGCCcaaCCCCUCa -3'
miRNA:   3'- cugGCGGCAGCac--UGGUGGc--GGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.