miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 49468 0.7 0.819866
Target:  5'- aGGCGggcGCgcaGGcCGCGCGGaAGCUGCa -3'
miRNA:   3'- gCUGCa--UGaagCU-GCGCGCC-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 37184 0.7 0.819866
Target:  5'- gGGCGcUGCUggCGGCGCugcugGCGGcGCUACu -3'
miRNA:   3'- gCUGC-AUGAa-GCUGCG-----CGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 112154 0.7 0.818127
Target:  5'- gCGACGccgaucaugcuCUUCGccggccGCGCGCGGGGCUcGCu -3'
miRNA:   3'- -GCUGCau---------GAAGC------UGCGCGCCUCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 19085 0.7 0.811104
Target:  5'- -cGCGUGCUUgCGugGCGuUGGaAGUUGCg -3'
miRNA:   3'- gcUGCAUGAA-GCugCGC-GCC-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 71186 0.7 0.811104
Target:  5'- gGGCGcaGCUcgCGGgGCGCGGccAGCUGCg -3'
miRNA:   3'- gCUGCa-UGAa-GCUgCGCGCC--UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 29338 0.7 0.802176
Target:  5'- -cGCGUgcGCUUCGGCgGCGCGG-GCgACa -3'
miRNA:   3'- gcUGCA--UGAAGCUG-CGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 32180 0.7 0.793091
Target:  5'- uGGCcUGCgggCGGCGCGCgcuGGAGCUGg -3'
miRNA:   3'- gCUGcAUGaa-GCUGCGCG---CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 41889 0.7 0.793091
Target:  5'- gCGGCGUAC-UCGcGCaGCGUGGGGUUGg -3'
miRNA:   3'- -GCUGCAUGaAGC-UG-CGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 117087 0.7 0.793091
Target:  5'- uCGGCGaguacucgaucaUGCUccCGACGCGCGGcGCUGa -3'
miRNA:   3'- -GCUGC------------AUGAa-GCUGCGCGCCuCGAUg -5'
23804 5' -54.2 NC_005261.1 + 95645 0.7 0.802176
Target:  5'- gGGCGaGCg-CGACGCGCGGcGCcGCg -3'
miRNA:   3'- gCUGCaUGaaGCUGCGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 130480 0.7 0.802176
Target:  5'- gCGGCGUGCcUCGGCG-GCGaGGGCcccgACg -3'
miRNA:   3'- -GCUGCAUGaAGCUGCgCGC-CUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 49914 0.69 0.868513
Target:  5'- aGACGUugUggcccgccUCGAgGCGCccgcGGAGCcGCg -3'
miRNA:   3'- gCUGCAugA--------AGCUgCGCG----CCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 43766 0.69 0.868513
Target:  5'- uGAagGUGCUcguggggCGGCGCGCGGAGg-GCg -3'
miRNA:   3'- gCUg-CAUGAa------GCUGCGCGCCUCgaUG- -5'
23804 5' -54.2 NC_005261.1 + 15510 0.69 0.860909
Target:  5'- gGGCGUGugUCGGCGUGCaggcaGGAGCggaagGCg -3'
miRNA:   3'- gCUGCAUgaAGCUGCGCG-----CCUCGa----UG- -5'
23804 5' -54.2 NC_005261.1 + 13685 0.69 0.853094
Target:  5'- gGGCGcGCgggCGugGgGCGGGGCggGCu -3'
miRNA:   3'- gCUGCaUGaa-GCugCgCGCCUCGa-UG- -5'
23804 5' -54.2 NC_005261.1 + 91257 0.69 0.845076
Target:  5'- uCGGCG-ACUUuguuaUGACG-GCGGAGCUGa -3'
miRNA:   3'- -GCUGCaUGAA-----GCUGCgCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 64779 0.69 0.845076
Target:  5'- gCGGCGcGCcaCGACGUGCGGcGCaGCg -3'
miRNA:   3'- -GCUGCaUGaaGCUGCGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 75259 0.69 0.83686
Target:  5'- cCGcGCGUACUcggccuUCGAgUGCGCGGuGCUGu -3'
miRNA:   3'- -GC-UGCAUGA------AGCU-GCGCGCCuCGAUg -5'
23804 5' -54.2 NC_005261.1 + 50870 0.69 0.83686
Target:  5'- uCGGCGc-CUUCGcCGCGCuGGcGCUGCu -3'
miRNA:   3'- -GCUGCauGAAGCuGCGCG-CCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 75318 0.69 0.868513
Target:  5'- --cCGU-CggCGGCGCGCGGAGCc-- -3'
miRNA:   3'- gcuGCAuGaaGCUGCGCGCCUCGaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.