Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 34604 | 0.73 | 0.613271 |
Target: 5'- aCGACGgcCUggcCGACGCGCuGGAGCc-- -3' miRNA: 3'- -GCUGCauGAa--GCUGCGCG-CCUCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 37184 | 0.7 | 0.819866 |
Target: 5'- gGGCGcUGCUggCGGCGCugcugGCGGcGCUACu -3' miRNA: 3'- gCUGC-AUGAa-GCUGCG-----CGCCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 37409 | 0.67 | 0.923388 |
Target: 5'- gGGCGUACUgggCcaaccccuacgccguGGCGCGCGG-GCUcGCc -3' miRNA: 3'- gCUGCAUGAa--G---------------CUGCGCGCCuCGA-UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 38204 | 0.73 | 0.632905 |
Target: 5'- gCGGCGUGCUgcugcucaacaccUCGcucacCGUGCGGAGCgggGCg -3' miRNA: 3'- -GCUGCAUGA-------------AGCu----GCGCGCCUCGa--UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 38510 | 0.67 | 0.921156 |
Target: 5'- gCGuCGUAUaa-GGCGCGCGcuGGCUGCg -3' miRNA: 3'- -GCuGCAUGaagCUGCGCGCc-UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 38898 | 0.66 | 0.936943 |
Target: 5'- aGACGUcguccuuCUcCGGCGCGCGG-GCccGCg -3' miRNA: 3'- gCUGCAu------GAaGCUGCGCGCCuCGa-UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 38947 | 0.79 | 0.328048 |
Target: 5'- gGGCGgGCcgCGGCGCGCGG-GCUGCg -3' miRNA: 3'- gCUGCaUGaaGCUGCGCGCCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 41889 | 0.7 | 0.793091 |
Target: 5'- gCGGCGUAC-UCGcGCaGCGUGGGGUUGg -3' miRNA: 3'- -GCUGCAUGaAGC-UG-CGCGCCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 42486 | 0.67 | 0.931924 |
Target: 5'- aGACGUuuugcGCggCGACGCGCGucGCg-- -3' miRNA: 3'- gCUGCA-----UGaaGCUGCGCGCcuCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 43766 | 0.69 | 0.868513 |
Target: 5'- uGAagGUGCUcguggggCGGCGCGCGGAGg-GCg -3' miRNA: 3'- gCUg-CAUGAa------GCUGCGCGCCUCgaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 44257 | 0.73 | 0.623602 |
Target: 5'- cCGACGccg--CGGCGCGCGGGGggGCg -3' miRNA: 3'- -GCUGCaugaaGCUGCGCGCCUCgaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 44423 | 0.72 | 0.675188 |
Target: 5'- -cGCGUACgcCGACGaCGUGGAGCgGCu -3' miRNA: 3'- gcUGCAUGaaGCUGC-GCGCCUCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 45665 | 0.67 | 0.926662 |
Target: 5'- gGGCGUGa-UCaACGCGCGccccGGGCUGCu -3' miRNA: 3'- gCUGCAUgaAGcUGCGCGC----CUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 49468 | 0.7 | 0.819866 |
Target: 5'- aGGCGggcGCgcaGGcCGCGCGGaAGCUGCa -3' miRNA: 3'- gCUGCa--UGaagCU-GCGCGCC-UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 49574 | 0.71 | 0.774486 |
Target: 5'- gGGCGUgaacacggGCUcggGGCGCGCGGcGCUGCu -3' miRNA: 3'- gCUGCA--------UGAag-CUGCGCGCCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 49804 | 0.68 | 0.883065 |
Target: 5'- aGACGUcgcccuccGCgg-GGCGCGUGGAGUUAa -3' miRNA: 3'- gCUGCA--------UGaagCUGCGCGCCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 49914 | 0.69 | 0.868513 |
Target: 5'- aGACGUugUggcccgccUCGAgGCGCccgcGGAGCcGCg -3' miRNA: 3'- gCUGCAugA--------AGCUgCGCG----CCUCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 50870 | 0.69 | 0.83686 |
Target: 5'- uCGGCGc-CUUCGcCGCGCuGGcGCUGCu -3' miRNA: 3'- -GCUGCauGAAGCuGCGCG-CCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 50992 | 0.67 | 0.909414 |
Target: 5'- cCGACGg----CGGCGCGUGG-GCgcgGCg -3' miRNA: 3'- -GCUGCaugaaGCUGCGCGCCuCGa--UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 54883 | 0.68 | 0.883065 |
Target: 5'- gGAUGaUGCgUCGGCGCGCGcGuGCcGCa -3' miRNA: 3'- gCUGC-AUGaAGCUGCGCGC-CuCGaUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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