Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 74675 | 0.66 | 0.950551 |
Target: 5'- gGACGcggACg-CGAcCGCGCGgGAGCUGg -3' miRNA: 3'- gCUGCa--UGaaGCU-GCGCGC-CUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 135079 | 0.66 | 0.958441 |
Target: 5'- cCGGCGgcggGCUcgCGGCccgGCgGCGGAGCgcgagGCg -3' miRNA: 3'- -GCUGCa---UGAa-GCUG---CG-CGCCUCGa----UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 100177 | 0.66 | 0.958441 |
Target: 5'- gGACGcaACgcCGugGCgGCGGGGCaGCg -3' miRNA: 3'- gCUGCa-UGaaGCugCG-CGCCUCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 131917 | 0.66 | 0.954612 |
Target: 5'- gGACGgGCUuuUUGGCGCGCGcGGGaCcGCg -3' miRNA: 3'- gCUGCaUGA--AGCUGCGCGC-CUC-GaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 83570 | 0.66 | 0.954612 |
Target: 5'- gGGCGUGCccgCGGCGCccGCGGccgccAGCaGCg -3' miRNA: 3'- gCUGCAUGaa-GCUGCG--CGCC-----UCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 24371 | 0.67 | 0.931409 |
Target: 5'- uCGGCgGUGCUcccggugggcucgUCGGCG-GCGGGGCg-- -3' miRNA: 3'- -GCUG-CAUGA-------------AGCUGCgCGCCUCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 98333 | 0.67 | 0.931924 |
Target: 5'- gCGGCGcGCcccgugUCGACGCG-GGGGCg-- -3' miRNA: 3'- -GCUGCaUGa-----AGCUGCGCgCCUCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 76151 | 0.67 | 0.931924 |
Target: 5'- uCGugGcgGCgcaCGACGcCGUGGcGCUGCa -3' miRNA: 3'- -GCugCa-UGaa-GCUGC-GCGCCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 42486 | 0.67 | 0.931924 |
Target: 5'- aGACGUuuugcGCggCGACGCGCGucGCg-- -3' miRNA: 3'- gCUGCA-----UGaaGCUGCGCGCcuCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 119789 | 0.67 | 0.926662 |
Target: 5'- -cGCGUACcgCa--GCGCGGAGCUGg -3' miRNA: 3'- gcUGCAUGaaGcugCGCGCCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 45665 | 0.67 | 0.926662 |
Target: 5'- gGGCGUGa-UCaACGCGCGccccGGGCUGCu -3' miRNA: 3'- gCUGCAUgaAGcUGCGCGC----CUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 117384 | 0.67 | 0.926122 |
Target: 5'- aGGCGcgcUGCUUCGGCgggGCGCccgacuuucggcuGGAGCUGg -3' miRNA: 3'- gCUGC---AUGAAGCUG---CGCG-------------CCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 37409 | 0.67 | 0.923388 |
Target: 5'- gGGCGUACUgggCcaaccccuacgccguGGCGCGCGG-GCUcGCc -3' miRNA: 3'- gCUGCAUGAa--G---------------CUGCGCGCCuCGA-UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 98919 | 0.67 | 0.921156 |
Target: 5'- uCGGCGggg-UCGGCuGCGgGGGGCaGCg -3' miRNA: 3'- -GCUGCaugaAGCUG-CGCgCCUCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 38510 | 0.67 | 0.921156 |
Target: 5'- gCGuCGUAUaa-GGCGCGCGcuGGCUGCg -3' miRNA: 3'- -GCuGCAUGaagCUGCGCGCc-UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 30125 | 0.67 | 0.921156 |
Target: 5'- uGGCGcgGCccgCGACGCGgUGGAGCgcgcGCg -3' miRNA: 3'- gCUGCa-UGaa-GCUGCGC-GCCUCGa---UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 110239 | 0.67 | 0.921156 |
Target: 5'- gCGugGgcgGCg-CGGCGCccGgGGGGCUGCg -3' miRNA: 3'- -GCugCa--UGaaGCUGCG--CgCCUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 67101 | 0.67 | 0.921156 |
Target: 5'- gCGACGcggUGCgggCGGCGCGCGcAGUgcgGCg -3' miRNA: 3'- -GCUGC---AUGaa-GCUGCGCGCcUCGa--UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 88818 | 0.67 | 0.913038 |
Target: 5'- gCGGCGggGCggCGGCGCGCGccggcccggcgucGGCUACc -3' miRNA: 3'- -GCUGCa-UGaaGCUGCGCGCc------------UCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 50992 | 0.67 | 0.909414 |
Target: 5'- cCGACGg----CGGCGCGUGG-GCgcgGCg -3' miRNA: 3'- -GCUGCaugaaGCUGCGCGCCuCGa--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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