miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 65811 0.66 0.946254
Target:  5'- uCGGgGUGCccgggCGGCgGCGCGaAGCUGCc -3'
miRNA:   3'- -GCUgCAUGaa---GCUG-CGCGCcUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 73487 0.66 0.954612
Target:  5'- gCGGCG-----CGGCGCGCGGAcGCgGCg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGCCU-CGaUG- -5'
23804 5' -54.2 NC_005261.1 + 93674 0.66 0.954612
Target:  5'- -cGCGgGCggCGGCGCcgGCGGGGCgccgGCg -3'
miRNA:   3'- gcUGCaUGaaGCUGCG--CGCCUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 85965 0.66 0.946254
Target:  5'- uGGCGUGgUcCGugauuGCGCGCucGAGCUGCg -3'
miRNA:   3'- gCUGCAUgAaGC-----UGCGCGc-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 2595 0.66 0.958441
Target:  5'- gCGGCGgaagccGCcgUCGGCG-GCGGGGCcGCc -3'
miRNA:   3'- -GCUGCa-----UGa-AGCUGCgCGCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 89117 0.66 0.946254
Target:  5'- gCGugGcACUgCG-CGCGcCGGAGCaGCa -3'
miRNA:   3'- -GCugCaUGAaGCuGCGC-GCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 55491 0.66 0.954612
Target:  5'- cCGACGcg---CGGCGCGCucuGGAGCaGCc -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCG---CCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 131917 0.66 0.954612
Target:  5'- gGACGgGCUuuUUGGCGCGCGcGGGaCcGCg -3'
miRNA:   3'- gCUGCaUGA--AGCUGCGCGC-CUC-GaUG- -5'
23804 5' -54.2 NC_005261.1 + 106400 0.66 0.958441
Target:  5'- uCGGCG-ACaUC--CGCGCGGcGCUGCa -3'
miRNA:   3'- -GCUGCaUGaAGcuGCGCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 117903 0.66 0.954612
Target:  5'- aGACGggugagCGGCuGCGCGGgaacgaaggccGGCUGCg -3'
miRNA:   3'- gCUGCaugaa-GCUG-CGCGCC-----------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 63827 0.66 0.950551
Target:  5'- cCGAC-UGCcUCGugGCGCGccaccugcAGCUGCc -3'
miRNA:   3'- -GCUGcAUGaAGCugCGCGCc-------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 30074 0.66 0.950551
Target:  5'- aGACGcGCUagCGGCGCaccCGGAGCg-- -3'
miRNA:   3'- gCUGCaUGAa-GCUGCGc--GCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 74675 0.66 0.950551
Target:  5'- gGACGcggACg-CGAcCGCGCGgGAGCUGg -3'
miRNA:   3'- gCUGCa--UGaaGCU-GCGCGC-CUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 75471 0.66 0.941719
Target:  5'- aGGCGccgggCGGCgGCGCGGGccGCUACg -3'
miRNA:   3'- gCUGCaugaaGCUG-CGCGCCU--CGAUG- -5'
23804 5' -54.2 NC_005261.1 + 38898 0.66 0.936943
Target:  5'- aGACGUcguccuuCUcCGGCGCGCGG-GCccGCg -3'
miRNA:   3'- gCUGCAu------GAaGCUGCGCGCCuCGa-UG- -5'
23804 5' -54.2 NC_005261.1 + 83570 0.66 0.954612
Target:  5'- gGGCGUGCccgCGGCGCccGCGGccgccAGCaGCg -3'
miRNA:   3'- gCUGCAUGaa-GCUGCG--CGCC-----UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 13098 0.66 0.945812
Target:  5'- gCGGCGgGCUcggcucgggggcgUCGGCGgcCGCGGGGCg-- -3'
miRNA:   3'- -GCUGCaUGA-------------AGCUGC--GCGCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 74479 0.66 0.953818
Target:  5'- gCGGCGUGCcugggcgggaucUCGGCGCucuuCGGGGCgGCg -3'
miRNA:   3'- -GCUGCAUGa-----------AGCUGCGc---GCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 14964 0.66 0.954216
Target:  5'- gGGCGUGCcuggggCGACuGCGCGGccgcgccGGCcGCg -3'
miRNA:   3'- gCUGCAUGaa----GCUG-CGCGCC-------UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 89584 0.66 0.936943
Target:  5'- aCGGcCGU-CUaCGACGCGCGacucgacGGCUACg -3'
miRNA:   3'- -GCU-GCAuGAaGCUGCGCGCc------UCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.