Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 38947 | 0.79 | 0.328048 |
Target: 5'- gGGCGgGCcgCGGCGCGCGG-GCUGCg -3' miRNA: 3'- gCUGCaUGaaGCUGCGCGCCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 56691 | 0.77 | 0.436102 |
Target: 5'- gCGACGUACUUUGugGCGgCGacGCUGCu -3' miRNA: 3'- -GCUGCAUGAAGCugCGC-GCcuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 1054 | 0.75 | 0.531754 |
Target: 5'- gCGGCGUuag-CGGCGCGgGGGGCUGg -3' miRNA: 3'- -GCUGCAugaaGCUGCGCgCCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 114272 | 0.74 | 0.561985 |
Target: 5'- aCGACGcgg--UGGCGCGCGcGGGCUACg -3' miRNA: 3'- -GCUGCaugaaGCUGCGCGC-CUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 34604 | 0.73 | 0.613271 |
Target: 5'- aCGACGgcCUggcCGACGCGCuGGAGCc-- -3' miRNA: 3'- -GCUGCauGAa--GCUGCGCG-CCUCGaug -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 44257 | 0.73 | 0.623602 |
Target: 5'- cCGACGccg--CGGCGCGCGGGGggGCg -3' miRNA: 3'- -GCUGCaugaaGCUGCGCGCCUCgaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 38204 | 0.73 | 0.632905 |
Target: 5'- gCGGCGUGCUgcugcucaacaccUCGcucacCGUGCGGAGCgggGCg -3' miRNA: 3'- -GCUGCAUGA-------------AGCu----GCGCGCCUCGa--UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 73788 | 0.73 | 0.633939 |
Target: 5'- gCGACGUGCgcgcggcggUCGGCGCGCaGaAGCcGCg -3' miRNA: 3'- -GCUGCAUGa--------AGCUGCGCGcC-UCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 76077 | 0.73 | 0.6546 |
Target: 5'- gGGCGgGCUgcugcgccUCGugGCGCuGGAGCUGg -3' miRNA: 3'- gCUGCaUGA--------AGCugCGCG-CCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 44423 | 0.72 | 0.675188 |
Target: 5'- -cGCGUACgcCGACGaCGUGGAGCgGCu -3' miRNA: 3'- gcUGCAUGaaGCUGC-GCGCCUCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 30247 | 0.72 | 0.675188 |
Target: 5'- uGGCGcggUAC-UCGACGCGCGGcGCgGCg -3' miRNA: 3'- gCUGC---AUGaAGCUGCGCGCCuCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 134291 | 0.72 | 0.699697 |
Target: 5'- gGGCGUGgguccacgucgccgcCUUCGcCGCGCuGGAGCUGg -3' miRNA: 3'- gCUGCAU---------------GAAGCuGCGCG-CCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 31588 | 0.72 | 0.715859 |
Target: 5'- gGACGUgaGCgcgcUCGGCGCGCaGGGcguGCUGCu -3' miRNA: 3'- gCUGCA--UGa---AGCUGCGCG-CCU---CGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 55741 | 0.71 | 0.735795 |
Target: 5'- gGGCGUGCUgccggacggccUCGACGCGCGccGCcGCc -3' miRNA: 3'- gCUGCAUGA-----------AGCUGCGCGCcuCGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 134198 | 0.71 | 0.745629 |
Target: 5'- uGGCGcgGCU-CGGCGCGCGGGucGCgGCg -3' miRNA: 3'- gCUGCa-UGAaGCUGCGCGCCU--CGaUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 71958 | 0.71 | 0.755362 |
Target: 5'- uGGCGU-CggcgCGGgGCGCGGAGCgcgcgGCa -3' miRNA: 3'- gCUGCAuGaa--GCUgCGCGCCUCGa----UG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 49574 | 0.71 | 0.774486 |
Target: 5'- gGGCGUgaacacggGCUcggGGCGCGCGGcGCUGCu -3' miRNA: 3'- gCUGCA--------UGAag-CUGCGCGCCuCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 127683 | 0.71 | 0.774486 |
Target: 5'- gCGGCGgccGCUgcccCGGCgGCGCcggaGGAGCUGCg -3' miRNA: 3'- -GCUGCa--UGAa---GCUG-CGCG----CCUCGAUG- -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 32180 | 0.7 | 0.793091 |
Target: 5'- uGGCcUGCgggCGGCGCGCgcuGGAGCUGg -3' miRNA: 3'- gCUGcAUGaa-GCUGCGCG---CCUCGAUg -5' |
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23804 | 5' | -54.2 | NC_005261.1 | + | 41889 | 0.7 | 0.793091 |
Target: 5'- gCGGCGUAC-UCGcGCaGCGUGGGGUUGg -3' miRNA: 3'- -GCUGCAUGaAGC-UG-CGCGCCUCGAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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