miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 44423 0.72 0.675188
Target:  5'- -cGCGUACgcCGACGaCGUGGAGCgGCu -3'
miRNA:   3'- gcUGCAUGaaGCUGC-GCGCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 106400 0.66 0.958441
Target:  5'- uCGGCG-ACaUC--CGCGCGGcGCUGCa -3'
miRNA:   3'- -GCUGCaUGaAGcuGCGCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 41889 0.7 0.793091
Target:  5'- gCGGCGUAC-UCGcGCaGCGUGGGGUUGg -3'
miRNA:   3'- -GCUGCAUGaAGC-UG-CGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 32180 0.7 0.793091
Target:  5'- uGGCcUGCgggCGGCGCGCgcuGGAGCUGg -3'
miRNA:   3'- gCUGcAUGaa-GCUGCGCG---CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 127683 0.71 0.774486
Target:  5'- gCGGCGgccGCUgcccCGGCgGCGCcggaGGAGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUG-CGCG----CCUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 49574 0.71 0.774486
Target:  5'- gGGCGUgaacacggGCUcggGGCGCGCGGcGCUGCu -3'
miRNA:   3'- gCUGCA--------UGAag-CUGCGCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 71958 0.71 0.755362
Target:  5'- uGGCGU-CggcgCGGgGCGCGGAGCgcgcgGCa -3'
miRNA:   3'- gCUGCAuGaa--GCUgCGCGCCUCGa----UG- -5'
23804 5' -54.2 NC_005261.1 + 134198 0.71 0.745629
Target:  5'- uGGCGcgGCU-CGGCGCGCGGGucGCgGCg -3'
miRNA:   3'- gCUGCa-UGAaGCUGCGCGCCU--CGaUG- -5'
23804 5' -54.2 NC_005261.1 + 55741 0.71 0.735795
Target:  5'- gGGCGUGCUgccggacggccUCGACGCGCGccGCcGCc -3'
miRNA:   3'- gCUGCAUGA-----------AGCUGCGCGCcuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 31588 0.72 0.715859
Target:  5'- gGACGUgaGCgcgcUCGGCGCGCaGGGcguGCUGCu -3'
miRNA:   3'- gCUGCA--UGa---AGCUGCGCG-CCU---CGAUG- -5'
23804 5' -54.2 NC_005261.1 + 134291 0.72 0.699697
Target:  5'- gGGCGUGgguccacgucgccgcCUUCGcCGCGCuGGAGCUGg -3'
miRNA:   3'- gCUGCAU---------------GAAGCuGCGCG-CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 38947 0.79 0.328048
Target:  5'- gGGCGgGCcgCGGCGCGCGG-GCUGCg -3'
miRNA:   3'- gCUGCaUGaaGCUGCGCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 30247 0.72 0.675188
Target:  5'- uGGCGcggUAC-UCGACGCGCGGcGCgGCg -3'
miRNA:   3'- gCUGC---AUGaAGCUGCGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 76077 0.73 0.6546
Target:  5'- gGGCGgGCUgcugcgccUCGugGCGCuGGAGCUGg -3'
miRNA:   3'- gCUGCaUGA--------AGCugCGCG-CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 73788 0.73 0.633939
Target:  5'- gCGACGUGCgcgcggcggUCGGCGCGCaGaAGCcGCg -3'
miRNA:   3'- -GCUGCAUGa--------AGCUGCGCGcC-UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 38204 0.73 0.632905
Target:  5'- gCGGCGUGCUgcugcucaacaccUCGcucacCGUGCGGAGCgggGCg -3'
miRNA:   3'- -GCUGCAUGA-------------AGCu----GCGCGCCUCGa--UG- -5'
23804 5' -54.2 NC_005261.1 + 44257 0.73 0.623602
Target:  5'- cCGACGccg--CGGCGCGCGGGGggGCg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGCCUCgaUG- -5'
23804 5' -54.2 NC_005261.1 + 34604 0.73 0.613271
Target:  5'- aCGACGgcCUggcCGACGCGCuGGAGCc-- -3'
miRNA:   3'- -GCUGCauGAa--GCUGCGCG-CCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 114272 0.74 0.561985
Target:  5'- aCGACGcgg--UGGCGCGCGcGGGCUACg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGC-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 1054 0.75 0.531754
Target:  5'- gCGGCGUuag-CGGCGCGgGGGGCUGg -3'
miRNA:   3'- -GCUGCAugaaGCUGCGCgCCUCGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.