miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 257 0.68 0.8759
Target:  5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 305 0.68 0.8759
Target:  5'- gCGGCGgcgGCUgcggCGGCGgcUGCGGcggcGGCUGCg -3'
miRNA:   3'- -GCUGCa--UGAa---GCUGC--GCGCC----UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 1054 0.75 0.531754
Target:  5'- gCGGCGUuag-CGGCGCGgGGGGCUGg -3'
miRNA:   3'- -GCUGCAugaaGCUGCGCgCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 1449 0.68 0.883065
Target:  5'- gCGGCGgcGCcUCGGCGUGCGGcuccAGCaGCg -3'
miRNA:   3'- -GCUGCa-UGaAGCUGCGCGCC----UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 2595 0.66 0.958441
Target:  5'- gCGGCGgaagccGCcgUCGGCG-GCGGGGCcGCc -3'
miRNA:   3'- -GCUGCa-----UGa-AGCUGCgCGCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 5519 0.69 0.826751
Target:  5'- gCGGCGgcgaggccgccgGCUUCGGCGCGCagcgagacggGGGGCg-- -3'
miRNA:   3'- -GCUGCa-----------UGAAGCUGCGCG----------CCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 13098 0.66 0.945812
Target:  5'- gCGGCGgGCUcggcucgggggcgUCGGCGgcCGCGGGGCg-- -3'
miRNA:   3'- -GCUGCaUGA-------------AGCUGC--GCGCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 13685 0.69 0.853094
Target:  5'- gGGCGcGCgggCGugGgGCGGGGCggGCu -3'
miRNA:   3'- gCUGCaUGaa-GCugCgCGCCUCGa-UG- -5'
23804 5' -54.2 NC_005261.1 + 14964 0.66 0.954216
Target:  5'- gGGCGUGCcuggggCGACuGCGCGGccgcgccGGCcGCg -3'
miRNA:   3'- gCUGCAUGaa----GCUG-CGCGCC-------UCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 15510 0.69 0.860909
Target:  5'- gGGCGUGugUCGGCGUGCaggcaGGAGCggaagGCg -3'
miRNA:   3'- gCUGCAUgaAGCUGCGCG-----CCUCGa----UG- -5'
23804 5' -54.2 NC_005261.1 + 19085 0.7 0.811104
Target:  5'- -cGCGUGCUUgCGugGCGuUGGaAGUUGCg -3'
miRNA:   3'- gcUGCAUGAA-GCugCGC-GCC-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 24371 0.67 0.931409
Target:  5'- uCGGCgGUGCUcccggugggcucgUCGGCG-GCGGGGCg-- -3'
miRNA:   3'- -GCUG-CAUGA-------------AGCUGCgCGCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 29338 0.7 0.802176
Target:  5'- -cGCGUgcGCUUCGGCgGCGCGG-GCgACa -3'
miRNA:   3'- gcUGCA--UGAAGCUG-CGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 29567 0.7 0.819866
Target:  5'- uGGCGcgccUGCUgcagCGGCGCGUGcaGGGCUGCc -3'
miRNA:   3'- gCUGC----AUGAa---GCUGCGCGC--CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 30074 0.66 0.950551
Target:  5'- aGACGcGCUagCGGCGCaccCGGAGCg-- -3'
miRNA:   3'- gCUGCaUGAa-GCUGCGc--GCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 30125 0.67 0.921156
Target:  5'- uGGCGcgGCccgCGACGCGgUGGAGCgcgcGCg -3'
miRNA:   3'- gCUGCa-UGaa-GCUGCGC-GCCUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 30247 0.72 0.675188
Target:  5'- uGGCGcggUAC-UCGACGCGCGGcGCgGCg -3'
miRNA:   3'- gCUGC---AUGaAGCUGCGCGCCuCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 31588 0.72 0.715859
Target:  5'- gGACGUgaGCgcgcUCGGCGCGCaGGGcguGCUGCu -3'
miRNA:   3'- gCUGCA--UGa---AGCUGCGCG-CCU---CGAUG- -5'
23804 5' -54.2 NC_005261.1 + 32180 0.7 0.793091
Target:  5'- uGGCcUGCgggCGGCGCGCgcuGGAGCUGg -3'
miRNA:   3'- gCUGcAUGaa-GCUGCGCG---CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 34022 0.68 0.87444
Target:  5'- uCGACGUGaucaccggcgCGGCGCGCGc-GCUGCc -3'
miRNA:   3'- -GCUGCAUgaa-------GCUGCGCGCcuCGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.