Results 41 - 60 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 55491 | 0.66 | 0.954612 |
Target: 5'- cCGACGcg---CGGCGCGCucuGGAGCaGCc -3' miRNA: 3'- -GCUGCaugaaGCUGCGCG---CCUCGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 55741 | 0.71 | 0.735795 |
Target: 5'- gGGCGUGCUgccggacggccUCGACGCGCGccGCcGCc -3' miRNA: 3'- gCUGCAUGA-----------AGCUGCGCGCcuCGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 56691 | 0.77 | 0.436102 |
Target: 5'- gCGACGUACUUUGugGCGgCGacGCUGCu -3' miRNA: 3'- -GCUGCAUGAAGCugCGC-GCcuCGAUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 62283 | 0.68 | 0.896709 |
Target: 5'- uGugGUACaucacgUCGGCGcCGCGcGGGCgcgcgGCg -3' miRNA: 3'- gCugCAUGa-----AGCUGC-GCGC-CUCGa----UG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 63827 | 0.66 | 0.950551 |
Target: 5'- cCGAC-UGCcUCGugGCGCGccaccugcAGCUGCc -3' miRNA: 3'- -GCUGcAUGaAGCugCGCGCc-------UCGAUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 64779 | 0.69 | 0.845076 |
Target: 5'- gCGGCGcGCcaCGACGUGCGGcGCaGCg -3' miRNA: 3'- -GCUGCaUGaaGCUGCGCGCCuCGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 65811 | 0.66 | 0.946254 |
Target: 5'- uCGGgGUGCccgggCGGCgGCGCGaAGCUGCc -3' miRNA: 3'- -GCUgCAUGaa---GCUG-CGCGCcUCGAUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 67101 | 0.67 | 0.921156 |
Target: 5'- gCGACGcggUGCgggCGGCGCGCGcAGUgcgGCg -3' miRNA: 3'- -GCUGC---AUGaa-GCUGCGCGCcUCGa--UG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 68152 | 0.7 | 0.819866 |
Target: 5'- cCGugGccgGCUacaCG-CGCGCGGAGCUcGCg -3' miRNA: 3'- -GCugCa--UGAa--GCuGCGCGCCUCGA-UG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 69454 | 0.68 | 0.896709 |
Target: 5'- gGACGaGCUgCGGCGCGuCGaGGGCcACa -3' miRNA: 3'- gCUGCaUGAaGCUGCGC-GC-CUCGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 71103 | 0.66 | 0.958441 |
Target: 5'- aGGCGUACa-CGGCGCGC--AGCuUGCg -3' miRNA: 3'- gCUGCAUGaaGCUGCGCGccUCG-AUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 71186 | 0.7 | 0.811104 |
Target: 5'- gGGCGcaGCUcgCGGgGCGCGGccAGCUGCg -3' miRNA: 3'- gCUGCa-UGAa-GCUgCGCGCC--UCGAUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 71958 | 0.71 | 0.755362 |
Target: 5'- uGGCGU-CggcgCGGgGCGCGGAGCgcgcgGCa -3' miRNA: 3'- gCUGCAuGaa--GCUgCGCGCCUCGa----UG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 73487 | 0.66 | 0.954612 |
Target: 5'- gCGGCG-----CGGCGCGCGGAcGCgGCg -3' miRNA: 3'- -GCUGCaugaaGCUGCGCGCCU-CGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 73726 | 0.68 | 0.890003 |
Target: 5'- uCGGCGUGCgcgcUUG-CGCGCGGGGgUcCg -3' miRNA: 3'- -GCUGCAUGa---AGCuGCGCGCCUCgAuG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 73788 | 0.73 | 0.633939 |
Target: 5'- gCGACGUGCgcgcggcggUCGGCGCGCaGaAGCcGCg -3' miRNA: 3'- -GCUGCAUGa--------AGCUGCGCGcC-UCGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 74479 | 0.66 | 0.953818 |
Target: 5'- gCGGCGUGCcugggcgggaucUCGGCGCucuuCGGGGCgGCg -3' miRNA: 3'- -GCUGCAUGa-----------AGCUGCGc---GCCUCGaUG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 74675 | 0.66 | 0.950551 |
Target: 5'- gGACGcggACg-CGAcCGCGCGgGAGCUGg -3' miRNA: 3'- gCUGCa--UGaaGCU-GCGCGC-CUCGAUg -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 74878 | 0.68 | 0.896709 |
Target: 5'- gGACGcgGCggCGGCG-GCGGAGUcgGCg -3' miRNA: 3'- gCUGCa-UGaaGCUGCgCGCCUCGa-UG- -5' |
|||||||
23804 | 5' | -54.2 | NC_005261.1 | + | 75259 | 0.69 | 0.83686 |
Target: 5'- cCGcGCGUACUcggccuUCGAgUGCGCGGuGCUGu -3' miRNA: 3'- -GC-UGCAUGA------AGCU-GCGCGCCuCGAUg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home