miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23804 5' -54.2 NC_005261.1 + 85965 0.66 0.946254
Target:  5'- uGGCGUGgUcCGugauuGCGCGCucGAGCUGCg -3'
miRNA:   3'- gCUGCAUgAaGC-----UGCGCGc-CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 13098 0.66 0.945812
Target:  5'- gCGGCGgGCUcggcucgggggcgUCGGCGgcCGCGGGGCg-- -3'
miRNA:   3'- -GCUGCaUGA-------------AGCUGC--GCGCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 75471 0.66 0.941719
Target:  5'- aGGCGccgggCGGCgGCGCGGGccGCUACg -3'
miRNA:   3'- gCUGCaugaaGCUG-CGCGCCU--CGAUG- -5'
23804 5' -54.2 NC_005261.1 + 89584 0.66 0.936943
Target:  5'- aCGGcCGU-CUaCGACGCGCGacucgacGGCUACg -3'
miRNA:   3'- -GCU-GCAuGAaGCUGCGCGCc------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 38898 0.66 0.936943
Target:  5'- aGACGUcguccuuCUcCGGCGCGCGG-GCccGCg -3'
miRNA:   3'- gCUGCAu------GAaGCUGCGCGCCuCGa-UG- -5'
23804 5' -54.2 NC_005261.1 + 98333 0.67 0.931924
Target:  5'- gCGGCGcGCcccgugUCGACGCG-GGGGCg-- -3'
miRNA:   3'- -GCUGCaUGa-----AGCUGCGCgCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 76151 0.67 0.931924
Target:  5'- uCGugGcgGCgcaCGACGcCGUGGcGCUGCa -3'
miRNA:   3'- -GCugCa-UGaa-GCUGC-GCGCCuCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 42486 0.67 0.931924
Target:  5'- aGACGUuuugcGCggCGACGCGCGucGCg-- -3'
miRNA:   3'- gCUGCA-----UGaaGCUGCGCGCcuCGaug -5'
23804 5' -54.2 NC_005261.1 + 24371 0.67 0.931409
Target:  5'- uCGGCgGUGCUcccggugggcucgUCGGCG-GCGGGGCg-- -3'
miRNA:   3'- -GCUG-CAUGA-------------AGCUGCgCGCCUCGaug -5'
23804 5' -54.2 NC_005261.1 + 45665 0.67 0.926662
Target:  5'- gGGCGUGa-UCaACGCGCGccccGGGCUGCu -3'
miRNA:   3'- gCUGCAUgaAGcUGCGCGC----CUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 119789 0.67 0.926662
Target:  5'- -cGCGUACcgCa--GCGCGGAGCUGg -3'
miRNA:   3'- gcUGCAUGaaGcugCGCGCCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 117384 0.67 0.926122
Target:  5'- aGGCGcgcUGCUUCGGCgggGCGCccgacuuucggcuGGAGCUGg -3'
miRNA:   3'- gCUGC---AUGAAGCUG---CGCG-------------CCUCGAUg -5'
23804 5' -54.2 NC_005261.1 + 37409 0.67 0.923388
Target:  5'- gGGCGUACUgggCcaaccccuacgccguGGCGCGCGG-GCUcGCc -3'
miRNA:   3'- gCUGCAUGAa--G---------------CUGCGCGCCuCGA-UG- -5'
23804 5' -54.2 NC_005261.1 + 98919 0.67 0.921156
Target:  5'- uCGGCGggg-UCGGCuGCGgGGGGCaGCg -3'
miRNA:   3'- -GCUGCaugaAGCUG-CGCgCCUCGaUG- -5'
23804 5' -54.2 NC_005261.1 + 38510 0.67 0.921156
Target:  5'- gCGuCGUAUaa-GGCGCGCGcuGGCUGCg -3'
miRNA:   3'- -GCuGCAUGaagCUGCGCGCc-UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 30125 0.67 0.921156
Target:  5'- uGGCGcgGCccgCGACGCGgUGGAGCgcgcGCg -3'
miRNA:   3'- gCUGCa-UGaa-GCUGCGC-GCCUCGa---UG- -5'
23804 5' -54.2 NC_005261.1 + 110239 0.67 0.921156
Target:  5'- gCGugGgcgGCg-CGGCGCccGgGGGGCUGCg -3'
miRNA:   3'- -GCugCa--UGaaGCUGCG--CgCCUCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 67101 0.67 0.921156
Target:  5'- gCGACGcggUGCgggCGGCGCGCGcAGUgcgGCg -3'
miRNA:   3'- -GCUGC---AUGaa-GCUGCGCGCcUCGa--UG- -5'
23804 5' -54.2 NC_005261.1 + 88818 0.67 0.913038
Target:  5'- gCGGCGggGCggCGGCGCGCGccggcccggcgucGGCUACc -3'
miRNA:   3'- -GCUGCa-UGaaGCUGCGCGCc------------UCGAUG- -5'
23804 5' -54.2 NC_005261.1 + 50992 0.67 0.909414
Target:  5'- cCGACGg----CGGCGCGUGG-GCgcgGCg -3'
miRNA:   3'- -GCUGCaugaaGCUGCGCGCCuCGa--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.