miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23805 5' -54.3 NC_005261.1 + 4908 0.75 0.450871
Target:  5'- cUUCGGCgGCGGCUGCcUCCGcCGCGGc -3'
miRNA:   3'- -AAGCUGgUGUCGAUGaAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 32224 0.73 0.582021
Target:  5'- -cCGGCCGCGGCgguggcCUUCUGCGCGGc -3'
miRNA:   3'- aaGCUGGUGUCGau----GAAGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 27902 0.72 0.62434
Target:  5'- aUCGGCCGCcGCUgccgaGCUUCCuuccuCGCGAUc -3'
miRNA:   3'- aAGCUGGUGuCGA-----UGAAGGu----GCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 57278 0.71 0.656174
Target:  5'- aUCGcGCgGCAGCUGCUcgcgagcagCCGCGCGAc -3'
miRNA:   3'- aAGC-UGgUGUCGAUGAa--------GGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 95597 0.71 0.676255
Target:  5'- cUCGcACCGCaccggccGGCUGCUggaCCGCGCGGUc -3'
miRNA:   3'- aAGC-UGGUG-------UCGAUGAa--GGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 55698 0.71 0.687821
Target:  5'- -gCGGCCACGGCcGCUUgggcggCCACGCGu- -3'
miRNA:   3'- aaGCUGGUGUCGaUGAA------GGUGCGCua -5'
23805 5' -54.3 NC_005261.1 + 105231 0.71 0.692012
Target:  5'- -gCGGCCGCGGCcgugaucugcggcgGCaUCCGCGCGAc -3'
miRNA:   3'- aaGCUGGUGUCGa-------------UGaAGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 21739 0.71 0.698283
Target:  5'- aUCGACaCGCGGCUGCUgcgCCuggaGCGCGc- -3'
miRNA:   3'- aAGCUG-GUGUCGAUGAa--GG----UGCGCua -5'
23805 5' -54.3 NC_005261.1 + 88438 0.7 0.729272
Target:  5'- --gGGCCACcGCUGCUggccgcgCCGCGUGAg -3'
miRNA:   3'- aagCUGGUGuCGAUGAa------GGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 104113 0.69 0.769277
Target:  5'- -gCGACCGCAGCcGCgcggUUCGcCGCGAg -3'
miRNA:   3'- aaGCUGGUGUCGaUGa---AGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 102632 0.69 0.778975
Target:  5'- cUCGGCCGCGGCUucgUCCGCGg--- -3'
miRNA:   3'- aAGCUGGUGUCGAugaAGGUGCgcua -5'
23805 5' -54.3 NC_005261.1 + 549 0.68 0.825146
Target:  5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3'
miRNA:   3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 138220 0.68 0.825146
Target:  5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3'
miRNA:   3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 109791 0.68 0.828651
Target:  5'- -cCGGCCGCuGCUgcgacggccggcgccGCUUCCGcCGCGGc -3'
miRNA:   3'- aaGCUGGUGuCGA---------------UGAAGGU-GCGCUa -5'
23805 5' -54.3 NC_005261.1 + 54702 0.68 0.832989
Target:  5'- --aGGCCGCAGCUcgcguuuagaaacACgaCCGCGCGGc -3'
miRNA:   3'- aagCUGGUGUCGA-------------UGaaGGUGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 30257 0.68 0.83385
Target:  5'- cUCGACgCGCGGCgcgGCggcCCGCGCGc- -3'
miRNA:   3'- aAGCUG-GUGUCGa--UGaa-GGUGCGCua -5'
23805 5' -54.3 NC_005261.1 + 134568 0.68 0.83385
Target:  5'- -gCGgcGCCGCGGCUGCgcagggcgggCCugGCGAg -3'
miRNA:   3'- aaGC--UGGUGUCGAUGaa--------GGugCGCUa -5'
23805 5' -54.3 NC_005261.1 + 58028 0.68 0.850658
Target:  5'- -gCGGCgGCAGCUccagggagcGCggCCGCGUGAUg -3'
miRNA:   3'- aaGCUGgUGUCGA---------UGaaGGUGCGCUA- -5'
23805 5' -54.3 NC_005261.1 + 10510 0.67 0.858746
Target:  5'- -gCGGCCGCcGCUGCgggCCcCGCGGc -3'
miRNA:   3'- aaGCUGGUGuCGAUGaa-GGuGCGCUa -5'
23805 5' -54.3 NC_005261.1 + 42640 0.67 0.858746
Target:  5'- cUCGGCCGCcGCgg---CCGCGCGGa -3'
miRNA:   3'- aAGCUGGUGuCGaugaaGGUGCGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.