Results 1 - 20 of 46 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 83612 | 0.66 | 0.926614 |
Target: 5'- cUCcGCCGCGGCguggUCCAgCGCGAg -3' miRNA: 3'- aAGcUGGUGUCGaugaAGGU-GCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 138220 | 0.68 | 0.825146 |
Target: 5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3' miRNA: 3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 109791 | 0.68 | 0.828651 |
Target: 5'- -cCGGCCGCuGCUgcgacggccggcgccGCUUCCGcCGCGGc -3' miRNA: 3'- aaGCUGGUGuCGA---------------UGAAGGU-GCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 54702 | 0.68 | 0.832989 |
Target: 5'- --aGGCCGCAGCUcgcguuuagaaacACgaCCGCGCGGc -3' miRNA: 3'- aagCUGGUGUCGA-------------UGaaGGUGCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 134568 | 0.68 | 0.83385 |
Target: 5'- -gCGgcGCCGCGGCUGCgcagggcgggCCugGCGAg -3' miRNA: 3'- aaGC--UGGUGUCGAUGaa--------GGugCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 30257 | 0.68 | 0.83385 |
Target: 5'- cUCGACgCGCGGCgcgGCggcCCGCGCGc- -3' miRNA: 3'- aAGCUG-GUGUCGa--UGaa-GGUGCGCua -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 58028 | 0.68 | 0.850658 |
Target: 5'- -gCGGCgGCAGCUccagggagcGCggCCGCGUGAUg -3' miRNA: 3'- aaGCUGgUGUCGA---------UGaaGGUGCGCUA- -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 10510 | 0.67 | 0.858746 |
Target: 5'- -gCGGCCGCcGCUGCgggCCcCGCGGc -3' miRNA: 3'- aaGCUGGUGuCGAUGaa-GGuGCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 42640 | 0.67 | 0.858746 |
Target: 5'- cUCGGCCGCcGCgg---CCGCGCGGa -3' miRNA: 3'- aAGCUGGUGuCGaugaaGGUGCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 549 | 0.68 | 0.825146 |
Target: 5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3' miRNA: 3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 102632 | 0.69 | 0.778975 |
Target: 5'- cUCGGCCGCGGCUucgUCCGCGg--- -3' miRNA: 3'- aAGCUGGUGUCGAugaAGGUGCgcua -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 104113 | 0.69 | 0.769277 |
Target: 5'- -gCGACCGCAGCcGCgcggUUCGcCGCGAg -3' miRNA: 3'- aaGCUGGUGUCGaUGa---AGGU-GCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 32224 | 0.73 | 0.582021 |
Target: 5'- -cCGGCCGCGGCgguggcCUUCUGCGCGGc -3' miRNA: 3'- aaGCUGGUGUCGau----GAAGGUGCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 27902 | 0.72 | 0.62434 |
Target: 5'- aUCGGCCGCcGCUgccgaGCUUCCuuccuCGCGAUc -3' miRNA: 3'- aAGCUGGUGuCGA-----UGAAGGu----GCGCUA- -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 57278 | 0.71 | 0.656174 |
Target: 5'- aUCGcGCgGCAGCUGCUcgcgagcagCCGCGCGAc -3' miRNA: 3'- aAGC-UGgUGUCGAUGAa--------GGUGCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 95597 | 0.71 | 0.676255 |
Target: 5'- cUCGcACCGCaccggccGGCUGCUggaCCGCGCGGUc -3' miRNA: 3'- aAGC-UGGUG-------UCGAUGAa--GGUGCGCUA- -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 55698 | 0.71 | 0.687821 |
Target: 5'- -gCGGCCACGGCcGCUUgggcggCCACGCGu- -3' miRNA: 3'- aaGCUGGUGUCGaUGAA------GGUGCGCua -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 105231 | 0.71 | 0.692012 |
Target: 5'- -gCGGCCGCGGCcgugaucugcggcgGCaUCCGCGCGAc -3' miRNA: 3'- aaGCUGGUGUCGa-------------UGaAGGUGCGCUa -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 21739 | 0.71 | 0.698283 |
Target: 5'- aUCGACaCGCGGCUGCUgcgCCuggaGCGCGc- -3' miRNA: 3'- aAGCUG-GUGUCGAUGAa--GG----UGCGCua -5' |
|||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 88438 | 0.7 | 0.729272 |
Target: 5'- --gGGCCACcGCUGCUggccgcgCCGCGUGAg -3' miRNA: 3'- aagCUGGUGuCGAUGAa------GGUGCGCUa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home