Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23805 | 5' | -54.3 | NC_005261.1 | + | 549 | 0.68 | 0.825146 |
Target: 5'- --gGACgGCGGCUcgGCcgCCGCGCGGUg -3' miRNA: 3'- aagCUGgUGUCGA--UGaaGGUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 4908 | 0.75 | 0.450871 |
Target: 5'- cUUCGGCgGCGGCUGCcUCCGcCGCGGc -3' miRNA: 3'- -AAGCUGgUGUCGAUGaAGGU-GCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 10510 | 0.67 | 0.858746 |
Target: 5'- -gCGGCCGCcGCUGCgggCCcCGCGGc -3' miRNA: 3'- aaGCUGGUGuCGAUGaa-GGuGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 15473 | 0.66 | 0.902435 |
Target: 5'- cUCGACCGCGGCgga---CACGCGc- -3' miRNA: 3'- aAGCUGGUGUCGaugaagGUGCGCua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 21739 | 0.71 | 0.698283 |
Target: 5'- aUCGACaCGCGGCUGCUgcgCCuggaGCGCGc- -3' miRNA: 3'- aAGCUG-GUGUCGAUGAa--GG----UGCGCua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 27902 | 0.72 | 0.62434 |
Target: 5'- aUCGGCCGCcGCUgccgaGCUUCCuuccuCGCGAUc -3' miRNA: 3'- aAGCUGGUGuCGA-----UGAAGGu----GCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 28222 | 0.67 | 0.866614 |
Target: 5'- -gCGGCCcCAGCUACcccccggCgCGCGCGAUa -3' miRNA: 3'- aaGCUGGuGUCGAUGaa-----G-GUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 28835 | 0.66 | 0.926614 |
Target: 5'- -gCGGCCGCGGCUgagGCggCCGuCGUGGc -3' miRNA: 3'- aaGCUGGUGUCGA---UGaaGGU-GCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 29404 | 0.66 | 0.926614 |
Target: 5'- -gCGGCCGCGcGCUACgcggcggCCGCGgGGc -3' miRNA: 3'- aaGCUGGUGU-CGAUGaa-----GGUGCgCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 30257 | 0.68 | 0.83385 |
Target: 5'- cUCGACgCGCGGCgcgGCggcCCGCGCGc- -3' miRNA: 3'- aAGCUG-GUGUCGa--UGaa-GGUGCGCua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 31989 | 0.66 | 0.926614 |
Target: 5'- -gCGcACCGCGGUgcccgUGCcgCCGCGCGAg -3' miRNA: 3'- aaGC-UGGUGUCG-----AUGaaGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 32224 | 0.73 | 0.582021 |
Target: 5'- -cCGGCCGCGGCgguggcCUUCUGCGCGGc -3' miRNA: 3'- aaGCUGGUGUCGau----GAAGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 35974 | 0.67 | 0.866614 |
Target: 5'- cUCGGCCGCuguAGCggcgGCggcUCCugGCGGc -3' miRNA: 3'- aAGCUGGUG---UCGa---UGa--AGGugCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 39026 | 0.67 | 0.888831 |
Target: 5'- -gCGuCCGCgAGCaGC-UCCACGCGGUg -3' miRNA: 3'- aaGCuGGUG-UCGaUGaAGGUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 42388 | 0.67 | 0.888831 |
Target: 5'- -cCGGCC-CAGCUGCgccUgCACGUGGUu -3' miRNA: 3'- aaGCUGGuGUCGAUGa--AgGUGCGCUA- -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 42640 | 0.67 | 0.858746 |
Target: 5'- cUCGGCCGCcGCgg---CCGCGCGGa -3' miRNA: 3'- aAGCUGGUGuCGaugaaGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 50928 | 0.66 | 0.926059 |
Target: 5'- -cCGGgCGCGGggcucccCUGCUUCUACGCGGc -3' miRNA: 3'- aaGCUgGUGUC-------GAUGAAGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 54702 | 0.68 | 0.832989 |
Target: 5'- --aGGCCGCAGCUcgcguuuagaaacACgaCCGCGCGGc -3' miRNA: 3'- aagCUGGUGUCGA-------------UGaaGGUGCGCUa -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 55698 | 0.71 | 0.687821 |
Target: 5'- -gCGGCCACGGCcGCUUgggcggCCACGCGu- -3' miRNA: 3'- aaGCUGGUGUCGaUGAA------GGUGCGCua -5' |
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23805 | 5' | -54.3 | NC_005261.1 | + | 57278 | 0.71 | 0.656174 |
Target: 5'- aUCGcGCgGCAGCUGCUcgcgagcagCCGCGCGAc -3' miRNA: 3'- aAGC-UGgUGUCGAUGAa--------GGUGCGCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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