miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23807 5' -62.6 NC_005261.1 + 112289 0.69 0.455841
Target:  5'- -cGCG-GCG-GGAUCGGGauuuCCUUCCa -3'
miRNA:   3'- gaCGCgCGCgCCUAGCCCg---GGAAGGc -5'
23807 5' -62.6 NC_005261.1 + 53875 0.69 0.455841
Target:  5'- -gGCGCGCGCGcugucGAgucgaagCGGGCCCgcUUCgCGa -3'
miRNA:   3'- gaCGCGCGCGC-----CUa------GCCCGGG--AAG-GC- -5'
23807 5' -62.6 NC_005261.1 + 21766 0.68 0.463823
Target:  5'- -cGCGCGCcgggcgagccgccGCGGcgCGGGCCg--CCGc -3'
miRNA:   3'- gaCGCGCG-------------CGCCuaGCCCGGgaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 11899 0.68 0.464714
Target:  5'- -cGCGCGCcCGccgCGGGCCCggcCCGg -3'
miRNA:   3'- gaCGCGCGcGCcuaGCCCGGGaa-GGC- -5'
23807 5' -62.6 NC_005261.1 + 130851 0.68 0.464714
Target:  5'- uUGCGCGCGCGcccGGcCGGGCgCCgcggCCu -3'
miRNA:   3'- gACGCGCGCGC---CUaGCCCG-GGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 71222 0.68 0.473677
Target:  5'- gUGCGCGCGCGca-CGcGGCCCUcggcggcgcagCCGa -3'
miRNA:   3'- gACGCGCGCGCcuaGC-CCGGGAa----------GGC- -5'
23807 5' -62.6 NC_005261.1 + 76478 0.68 0.473677
Target:  5'- -cGCGCGCGCGGAccccgagcccUCGGcGCUCgcgCgCGc -3'
miRNA:   3'- gaCGCGCGCGCCU----------AGCC-CGGGaa-G-GC- -5'
23807 5' -62.6 NC_005261.1 + 73792 0.68 0.480001
Target:  5'- -cGUGCGCGCGGcgGUCGGcgcgcagaagccgcGCCCgcgCCu -3'
miRNA:   3'- gaCGCGCGCGCC--UAGCC--------------CGGGaa-GGc -5'
23807 5' -62.6 NC_005261.1 + 49233 0.68 0.482725
Target:  5'- -aGCGCGCGCaGGUCGGccGCCg--CCGc -3'
miRNA:   3'- gaCGCGCGCGcCUAGCC--CGGgaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 107929 0.68 0.491855
Target:  5'- gUGC-CGCGCGGAUCGccGCCaCguagUCCGu -3'
miRNA:   3'- gACGcGCGCGCCUAGCc-CGG-Ga---AGGC- -5'
23807 5' -62.6 NC_005261.1 + 67829 0.68 0.491855
Target:  5'- -gGCGCGCGCaGGA--GGGCCgCacucUCCGg -3'
miRNA:   3'- gaCGCGCGCG-CCUagCCCGG-Ga---AGGC- -5'
23807 5' -62.6 NC_005261.1 + 31839 0.68 0.501065
Target:  5'- -cGCGCGCcgugcuggccucGCGGcgcgucuUCGGGCCCggcgCCu -3'
miRNA:   3'- gaCGCGCG------------CGCCu------AGCCCGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 104178 0.68 0.501065
Target:  5'- -cGcCGCGCGCGGGucgUCGGGCgggaCggcgUCCa -3'
miRNA:   3'- gaC-GCGCGCGCCU---AGCCCGg---Ga---AGGc -5'
23807 5' -62.6 NC_005261.1 + 59078 0.68 0.501065
Target:  5'- -aGCGCGCGCGGGUgcgcCGcGCCCU-CgCGc -3'
miRNA:   3'- gaCGCGCGCGCCUA----GCcCGGGAaG-GC- -5'
23807 5' -62.6 NC_005261.1 + 118845 0.68 0.51035
Target:  5'- uCUGCG-GCGCGGAgggCGGcgcGCCCgcggCCc -3'
miRNA:   3'- -GACGCgCGCGCCUa--GCC---CGGGaa--GGc -5'
23807 5' -62.6 NC_005261.1 + 20456 0.68 0.51035
Target:  5'- gUGCcCGCGCGGGUguGGCgCUUCCu -3'
miRNA:   3'- gACGcGCGCGCCUAgcCCGgGAAGGc -5'
23807 5' -62.6 NC_005261.1 + 93767 0.68 0.51035
Target:  5'- -cGCGCGCGCGGcGUCgcagcaGGuGCCC--CCGg -3'
miRNA:   3'- gaCGCGCGCGCC-UAG------CC-CGGGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 47771 0.67 0.519706
Target:  5'- -gGCGCGUcucccgguagaaGCGGAa-GGGCCCgaUCCGc -3'
miRNA:   3'- gaCGCGCG------------CGCCUagCCCGGGa-AGGC- -5'
23807 5' -62.6 NC_005261.1 + 97005 0.67 0.519706
Target:  5'- -aGCGCGCcauuggGCGGGccgUCGGGCgCgcCCGg -3'
miRNA:   3'- gaCGCGCG------CGCCU---AGCCCGgGaaGGC- -5'
23807 5' -62.6 NC_005261.1 + 116159 0.67 0.519706
Target:  5'- -aGCaGCGCGCGG-UCGcGGCCgCgUCCc -3'
miRNA:   3'- gaCG-CGCGCGCCuAGC-CCGG-GaAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.