Results 41 - 60 of 576 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23809 | 5' | -66.7 | NC_005261.1 | + | 5104 | 0.66 | 0.359042 |
Target: 5'- cGCCacagcuCCGCCAGCu-CGGCgCGGGCGg -3' miRNA: 3'- aCGGcc----GGCGGUCGucGUCG-GCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 109857 | 0.66 | 0.351528 |
Target: 5'- gUGgCGGCUcCUGGgGGCAGCgGGGCc -3' miRNA: 3'- -ACgGCCGGcGGUCgUCGUCGgCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 94623 | 0.66 | 0.359042 |
Target: 5'- cGCC-GCCGCCGGCGccGUcGUCGGcGCGc -3' miRNA: 3'- aCGGcCGGCGGUCGU--CGuCGGCC-CGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 55692 | 0.66 | 0.359042 |
Target: 5'- aGCaCGGCgGCCA-CGGCcGCUuGGGCGg -3' miRNA: 3'- aCG-GCCGgCGGUcGUCGuCGG-CCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 135434 | 0.66 | 0.366667 |
Target: 5'- cGCuCGcacGCCGCCca-GGCGGCgCGGGCGc -3' miRNA: 3'- aCG-GC---CGGCGGucgUCGUCG-GCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 23796 | 0.66 | 0.358285 |
Target: 5'- cGCCggGGCagGCCGGCuggGGCGGgcuugccCCGGGCGg -3' miRNA: 3'- aCGG--CCGg-CGGUCG---UCGUC-------GGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 129880 | 0.66 | 0.351528 |
Target: 5'- uUGCucuCGGCCGCCAuGCGGaUGGCCuGGUc -3' miRNA: 3'- -ACG---GCCGGCGGU-CGUC-GUCGGcCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 27774 | 0.66 | 0.366667 |
Target: 5'- aGCCGGCCuaGCUAGcCAGCcuuGCCGucgaGCGa -3' miRNA: 3'- aCGGCCGG--CGGUC-GUCGu--CGGCc---CGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 70664 | 0.66 | 0.351528 |
Target: 5'- cGCCgcGGCCGCgGGCcGCaccuccAGCCaGGCGu -3' miRNA: 3'- aCGG--CCGGCGgUCGuCG------UCGGcCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 59007 | 0.66 | 0.382249 |
Target: 5'- cGCCgGGCuCGcCCAGCGGCGccGCCaggaacGGGUg -3' miRNA: 3'- aCGG-CCG-GC-GGUCGUCGU--CGG------CCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 20877 | 0.66 | 0.359042 |
Target: 5'- gGCCGGCCaucGCCAGCucGUGGCCGc--- -3' miRNA: 3'- aCGGCCGG---CGGUCGu-CGUCGGCccgu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 30780 | 0.66 | 0.351528 |
Target: 5'- aGcCCGGCCGCggCGGUggAGguGCUGGGg- -3' miRNA: 3'- aC-GGCCGGCG--GUCG--UCguCGGCCCgu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 92596 | 0.66 | 0.366667 |
Target: 5'- aGCgCaGCCGCUcGCGGCGcguGCCGGGg- -3' miRNA: 3'- aCG-GcCGGCGGuCGUCGU---CGGCCCgu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 23853 | 0.66 | 0.358285 |
Target: 5'- cGCCggGGCagGCCGGCuggGGCGGgcuugccCCGGGCGg -3' miRNA: 3'- aCGG--CCGg-CGGUCG---UCGUC-------GGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 18735 | 0.66 | 0.381459 |
Target: 5'- cGCgGGgCGCCccaaaacAGCGGCcccgcagagcagGGCCaGGGCAa -3' miRNA: 3'- aCGgCCgGCGG-------UCGUCG------------UCGG-CCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 55981 | 0.66 | 0.366667 |
Target: 5'- cGCCGccGUCGCCAuCGGCAaCCGcGGCGg -3' miRNA: 3'- aCGGC--CGGCGGUcGUCGUcGGC-CCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 59987 | 0.66 | 0.382249 |
Target: 5'- cGCCGuCCGCacccucgGGCAGCGcGaCGGGCAg -3' miRNA: 3'- aCGGCcGGCGg------UCGUCGU-CgGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 23466 | 0.66 | 0.358285 |
Target: 5'- cGCCaGGCC-CgCGGCGGCGagugcgcgggcccGCCuGGGCAg -3' miRNA: 3'- aCGG-CCGGcG-GUCGUCGU-------------CGG-CCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 124661 | 0.66 | 0.381459 |
Target: 5'- -cCCGGCCcuccaaaauccugGgCAGCGGCaccucuaccugaGGCUGGGCAg -3' miRNA: 3'- acGGCCGG-------------CgGUCGUCG------------UCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 50987 | 0.66 | 0.366667 |
Target: 5'- -cUCGGCCGaCGGCGGC-GCgUGGGCGc -3' miRNA: 3'- acGGCCGGCgGUCGUCGuCG-GCCCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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