miRNA display CGI


Results 21 - 40 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 50987 0.66 0.366667
Target:  5'- -cUCGGCCGaCGGCGGC-GCgUGGGCGc -3'
miRNA:   3'- acGGCCGGCgGUCGUCGuCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 45636 0.66 0.351528
Target:  5'- gGCgGGCCcgcGCCGG-AGCAGUgcccagCGGGCGu -3'
miRNA:   3'- aCGgCCGG---CGGUCgUCGUCG------GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 30780 0.66 0.351528
Target:  5'- aGcCCGGCCGCggCGGUggAGguGCUGGGg- -3'
miRNA:   3'- aC-GGCCGGCG--GUCG--UCguCGGCCCgu -5'
23809 5' -66.7 NC_005261.1 + 69663 0.66 0.366667
Target:  5'- -aCCGGCgGCUGGgGGUGGCCGG-CAu -3'
miRNA:   3'- acGGCCGgCGGUCgUCGUCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 129649 0.66 0.359042
Target:  5'- cGgUGGCgG-CGGCGGCGGCagGGGCGg -3'
miRNA:   3'- aCgGCCGgCgGUCGUCGUCGg-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 23796 0.66 0.358285
Target:  5'- cGCCggGGCagGCCGGCuggGGCGGgcuugccCCGGGCGg -3'
miRNA:   3'- aCGG--CCGg-CGGUCG---UCGUC-------GGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 35605 0.66 0.366667
Target:  5'- cGcCCGGCCccGCC-GCGGCAGCCGuuucuGCc -3'
miRNA:   3'- aC-GGCCGG--CGGuCGUCGUCGGCc----CGu -5'
23809 5' -66.7 NC_005261.1 + 97855 0.66 0.359042
Target:  5'- nGCC-GCCGCggCAGC-GCGGCCGG-CAu -3'
miRNA:   3'- aCGGcCGGCG--GUCGuCGUCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 109857 0.66 0.351528
Target:  5'- gUGgCGGCUcCUGGgGGCAGCgGGGCc -3'
miRNA:   3'- -ACgGCCGGcGGUCgUCGUCGgCCCGu -5'
23809 5' -66.7 NC_005261.1 + 92596 0.66 0.366667
Target:  5'- aGCgCaGCCGCUcGCGGCGcguGCCGGGg- -3'
miRNA:   3'- aCG-GcCGGCGGuCGUCGU---CGGCCCgu -5'
23809 5' -66.7 NC_005261.1 + 5910 0.66 0.359042
Target:  5'- gGCCGGCCgGCUGGCuAGCucGCuCGacGGCAa -3'
miRNA:   3'- aCGGCCGG-CGGUCG-UCGu-CG-GC--CCGU- -5'
23809 5' -66.7 NC_005261.1 + 94623 0.66 0.359042
Target:  5'- cGCC-GCCGCCGGCGccGUcGUCGGcGCGc -3'
miRNA:   3'- aCGGcCGGCGGUCGU--CGuCGGCC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 33758 0.66 0.359042
Target:  5'- gGCCgGGCCcgcucgcgggGCCcGCGGCGagcGCUGGGCc -3'
miRNA:   3'- aCGG-CCGG----------CGGuCGUCGU---CGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 5709 0.66 0.366667
Target:  5'- cGCCGGCCcCCuuucGCGGagaGGCCGG-CGg -3'
miRNA:   3'- aCGGCCGGcGGu---CGUCg--UCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 5283 0.66 0.351528
Target:  5'- gGCCGGCCGC--GguGC-GCgCGGGUc -3'
miRNA:   3'- aCGGCCGGCGguCguCGuCG-GCCCGu -5'
23809 5' -66.7 NC_005261.1 + 90211 0.66 0.351528
Target:  5'- gGgCGGCggagCGCCcucgcGCGGCGGgCGGGCGc -3'
miRNA:   3'- aCgGCCG----GCGGu----CGUCGUCgGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 129880 0.66 0.351528
Target:  5'- uUGCucuCGGCCGCCAuGCGGaUGGCCuGGUc -3'
miRNA:   3'- -ACG---GCCGGCGGU-CGUC-GUCGGcCCGu -5'
23809 5' -66.7 NC_005261.1 + 23466 0.66 0.358285
Target:  5'- cGCCaGGCC-CgCGGCGGCGagugcgcgggcccGCCuGGGCAg -3'
miRNA:   3'- aCGG-CCGGcG-GUCGUCGU-------------CGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 70664 0.66 0.351528
Target:  5'- cGCCgcGGCCGCgGGCcGCaccuccAGCCaGGCGu -3'
miRNA:   3'- aCGG--CCGGCGgUCGuCG------UCGGcCCGU- -5'
23809 5' -66.7 NC_005261.1 + 135434 0.66 0.366667
Target:  5'- cGCuCGcacGCCGCCca-GGCGGCgCGGGCGc -3'
miRNA:   3'- aCG-GC---CGGCGGucgUCGUCG-GCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.