miRNA display CGI


Results 21 - 40 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 19163 0.77 0.060449
Target:  5'- aGCCGGCggaucaCGCgaAGCAGCuGCCGGGCGc -3'
miRNA:   3'- aCGGCCG------GCGg-UCGUCGuCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 1171 0.77 0.062024
Target:  5'- cGCCGGCCcgcGCC-GCGGCcggggccggGGCCGGGCGc -3'
miRNA:   3'- aCGGCCGG---CGGuCGUCG---------UCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 102940 0.77 0.062024
Target:  5'- cGCCGccGCCGCUgcGGCGGCGGCCgcGGGCGc -3'
miRNA:   3'- aCGGC--CGGCGG--UCGUCGUCGG--CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 44235 0.77 0.063475
Target:  5'- cUGCUGGCCGcCCAGCGcGCGGCCGacgccgcGGCGc -3'
miRNA:   3'- -ACGGCCGGC-GGUCGU-CGUCGGC-------CCGU- -5'
23809 5' -66.7 NC_005261.1 + 77220 0.77 0.063638
Target:  5'- cGCUGGCCgggggggaggaGCCAGagcGCAGCCGGGCu -3'
miRNA:   3'- aCGGCCGG-----------CGGUCgu-CGUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 98141 0.77 0.063638
Target:  5'- cGgCGGCCGUCGGCGGCaaGGCCgcGGGCGg -3'
miRNA:   3'- aCgGCCGGCGGUCGUCG--UCGG--CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 91147 0.77 0.065293
Target:  5'- aGCCGuGCCGCCcGGCgAGUGGCCcGGGCGg -3'
miRNA:   3'- aCGGC-CGGCGG-UCG-UCGUCGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 38923 0.77 0.065293
Target:  5'- gGCCcGCgCGCCaAGcCGGCGGCCGGGCGg -3'
miRNA:   3'- aCGGcCG-GCGG-UC-GUCGUCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 127829 0.77 0.06699
Target:  5'- cGCucgCGGCCGCgAGCAGCGGaCgGGGCGg -3'
miRNA:   3'- aCG---GCCGGCGgUCGUCGUC-GgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 115919 0.77 0.06699
Target:  5'- cGCCGGCCGCC-GCGuccGCGcGCgGGGCAg -3'
miRNA:   3'- aCGGCCGGCGGuCGU---CGU-CGgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 12135 0.77 0.068729
Target:  5'- cGCCcGCCGCC-GCGGCGGCCGcGCAg -3'
miRNA:   3'- aCGGcCGGCGGuCGUCGUCGGCcCGU- -5'
23809 5' -66.7 NC_005261.1 + 71062 0.77 0.068729
Target:  5'- gGCCaGCCGCCGcGCGGCgGGCgGGGCGu -3'
miRNA:   3'- aCGGcCGGCGGU-CGUCG-UCGgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 29330 0.77 0.068729
Target:  5'- cGcCCGGCCGCguGCgcuucGGCGGCgCGGGCGa -3'
miRNA:   3'- aC-GGCCGGCGguCG-----UCGUCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 97159 0.77 0.068729
Target:  5'- cGCCGGCCcgGCCGGCugggucgcgGGCgccGGCCGGGCc -3'
miRNA:   3'- aCGGCCGG--CGGUCG---------UCG---UCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 3513 0.76 0.072339
Target:  5'- aGCgCGGCCGCCuccagcGCGGCGGCCGccucGGCGc -3'
miRNA:   3'- aCG-GCCGGCGGu-----CGUCGUCGGC----CCGU- -5'
23809 5' -66.7 NC_005261.1 + 98780 0.76 0.074973
Target:  5'- cGCCGGCCGCCGGCcGCGcgugcgaaacgggucGCCGGcgGCGu -3'
miRNA:   3'- aCGGCCGGCGGUCGuCGU---------------CGGCC--CGU- -5'
23809 5' -66.7 NC_005261.1 + 77997 0.76 0.07613
Target:  5'- gUGCCuGCCGCagCAGCAGCAGCCGccGCAg -3'
miRNA:   3'- -ACGGcCGGCG--GUCGUCGUCGGCc-CGU- -5'
23809 5' -66.7 NC_005261.1 + 55928 0.76 0.07613
Target:  5'- aGCC-GCCGCCGGCGcGCAGCCGuuuGGCu -3'
miRNA:   3'- aCGGcCGGCGGUCGU-CGUCGGC---CCGu -5'
23809 5' -66.7 NC_005261.1 + 2923 0.76 0.078096
Target:  5'- -uCCGGCC-CCAGCAccuccaccgccGCGGCCGGGCu -3'
miRNA:   3'- acGGCCGGcGGUCGU-----------CGUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 129724 0.76 0.078096
Target:  5'- cGCCGGCUGCagCGGCagGGCGGCgGGGCc -3'
miRNA:   3'- aCGGCCGGCG--GUCG--UCGUCGgCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.