miRNA display CGI


Results 1 - 20 of 576 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 2798 0.85 0.01515
Target:  5'- cGCCGGCgGCCGGgAGgGGCCGGGCGg -3'
miRNA:   3'- aCGGCCGgCGGUCgUCgUCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 44030 0.81 0.030781
Target:  5'- gGgCGGCCGCCGcGCGGCGGCCgcGGGCGg -3'
miRNA:   3'- aCgGCCGGCGGU-CGUCGUCGG--CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 21790 0.81 0.03329
Target:  5'- cGCgGGCCGCC-GCAGCcgccGGCCGGGCc -3'
miRNA:   3'- aCGgCCGGCGGuCGUCG----UCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 16301 0.81 0.03417
Target:  5'- cGUCGGgC-CCAGCGGCGGCCGGGCc -3'
miRNA:   3'- aCGGCCgGcGGUCGUCGUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 44284 0.8 0.035073
Target:  5'- gGCCcGCCGCCAGCGGCGgGCCaGGGCc -3'
miRNA:   3'- aCGGcCGGCGGUCGUCGU-CGG-CCCGu -5'
23809 5' -66.7 NC_005261.1 + 101857 0.8 0.037925
Target:  5'- cGCCGGCCGCCuGCAGCAcguccgcgcGCaGGGCGc -3'
miRNA:   3'- aCGGCCGGCGGuCGUCGU---------CGgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 83584 0.8 0.039952
Target:  5'- cGCCcgcGGCCGCCAGCAGCGcgucgcucuccGCCGcGGCGu -3'
miRNA:   3'- aCGG---CCGGCGGUCGUCGU-----------CGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 33462 0.79 0.044328
Target:  5'- cGCCGcaGCCGCC-GCcGCAGCCGGGCc -3'
miRNA:   3'- aCGGC--CGGCGGuCGuCGUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 30926 0.79 0.044328
Target:  5'- -cCCGGCCGCCGGC-GCAGCCccucggGGGCGg -3'
miRNA:   3'- acGGCCGGCGGUCGuCGUCGG------CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 93816 0.79 0.045493
Target:  5'- cGCC-GCCGCCAccgccGCAGCcGCCGGGCGg -3'
miRNA:   3'- aCGGcCGGCGGU-----CGUCGuCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 2603 0.79 0.047914
Target:  5'- aGCC-GCCGUCGGCGGCGgggccGCCGGGCGg -3'
miRNA:   3'- aCGGcCGGCGGUCGUCGU-----CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 55166 0.79 0.049171
Target:  5'- cGCC-GCCGCCGGCGGCucGCgGGGCGg -3'
miRNA:   3'- aCGGcCGGCGGUCGUCGu-CGgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 97090 0.78 0.05046
Target:  5'- cGCCGGCUggGCCGGgGGCgccAGCCGGGCc -3'
miRNA:   3'- aCGGCCGG--CGGUCgUCG---UCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 95610 0.78 0.052727
Target:  5'- gGCCGGCUGCUggaccgcgcgguccAGgAGCGGCUGGGCGa -3'
miRNA:   3'- aCGGCCGGCGG--------------UCgUCGUCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 90776 0.78 0.053137
Target:  5'- cGCCgaGGCCGCU-GCGGCGGCCGGcGCGc -3'
miRNA:   3'- aCGG--CCGGCGGuCGUCGUCGGCC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 4374 0.78 0.053137
Target:  5'- cGcCCGcGCCGCCGaagcGCAcGCGGCCGGGCGg -3'
miRNA:   3'- aC-GGC-CGGCGGU----CGU-CGUCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 31023 0.78 0.055953
Target:  5'- cGCCGGCCaaaaGCCGGCGcGCcGCCGGGUc -3'
miRNA:   3'- aCGGCCGG----CGGUCGU-CGuCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 50177 0.78 0.057414
Target:  5'- cGCgGGCacCGCC-GCAGCAGCCGGuGCAg -3'
miRNA:   3'- aCGgCCG--GCGGuCGUCGUCGGCC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 42646 0.77 0.058309
Target:  5'- cGCCgcGGCCGCgcggaaccagccaAGCGGCGGCCGGGCc -3'
miRNA:   3'- aCGG--CCGGCGg------------UCGUCGUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 115407 0.77 0.058912
Target:  5'- cGUCGaCCGCgGGCGGCAGCCGGGg- -3'
miRNA:   3'- aCGGCcGGCGgUCGUCGUCGGCCCgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.