miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 122 0.67 0.336838
Target:  5'- cGCCGgcGCCGCCccuGguGCucGCgGGGCu -3'
miRNA:   3'- aCGGC--CGGCGGu--CguCGu-CGgCCCGu -5'
23809 5' -66.7 NC_005261.1 + 248 0.74 0.114052
Target:  5'- gGcCCGGCUG-CGGCGGCGGCUGcGGCGg -3'
miRNA:   3'- aC-GGCCGGCgGUCGUCGUCGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 285 0.72 0.142543
Target:  5'- cGgCGGCUG-CGGCGGCGGCUGcGGCGg -3'
miRNA:   3'- aCgGCCGGCgGUCGUCGUCGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 321 0.72 0.142543
Target:  5'- cGgCGGCUG-CGGCGGCGGCUGcGGCGg -3'
miRNA:   3'- aCgGCCGGCgGUCGUCGUCGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 353 0.67 0.3226
Target:  5'- aGcCCGGCgCGgcCCGGCGGCGGUgGcGGCg -3'
miRNA:   3'- aC-GGCCG-GC--GGUCGUCGUCGgC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 384 0.68 0.264132
Target:  5'- gUGgCGGCgG-CGGCGGCGGCgGcGGCAg -3'
miRNA:   3'- -ACgGCCGgCgGUCGUCGUCGgC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 641 0.68 0.264132
Target:  5'- cGgCGGCCGCCAGCGccGCGuccCCGGcGCc -3'
miRNA:   3'- aCgGCCGGCGGUCGU--CGUc--GGCC-CGu -5'
23809 5' -66.7 NC_005261.1 + 1171 0.77 0.062024
Target:  5'- cGCCGGCCcgcGCC-GCGGCcggggccggGGCCGGGCGc -3'
miRNA:   3'- aCGGCCGG---CGGuCGUCG---------UCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 1291 0.72 0.146084
Target:  5'- gGCCGGCggggcucccguCGCCGGCGGCGGCaCGcGCu -3'
miRNA:   3'- aCGGCCG-----------GCGGUCGUCGUCG-GCcCGu -5'
23809 5' -66.7 NC_005261.1 + 1395 0.74 0.100613
Target:  5'- cGCCGGgCGCCgcggccgcGGCGGCGGCgGgGGCGg -3'
miRNA:   3'- aCGGCCgGCGG--------UCGUCGUCGgC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 1501 0.75 0.088678
Target:  5'- cGCC-GCgGCCGGCAGCucGUCGGGCGc -3'
miRNA:   3'- aCGGcCGgCGGUCGUCGu-CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 1562 0.68 0.276339
Target:  5'- -aCCGGCCG-CAGCGGCGcGCCGaGCc -3'
miRNA:   3'- acGGCCGGCgGUCGUCGU-CGGCcCGu -5'
23809 5' -66.7 NC_005261.1 + 1700 0.73 0.135697
Target:  5'- aGCaCGcGCUGCCGguacucgcGCGGCGGCaCGGGCAc -3'
miRNA:   3'- aCG-GC-CGGCGGU--------CGUCGUCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 1932 0.67 0.336838
Target:  5'- -aCUGcGCCGCgGGCAGCA-CCGcGGCGc -3'
miRNA:   3'- acGGC-CGGCGgUCGUCGUcGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 2035 0.71 0.186124
Target:  5'- aGCC-GCCGCCGcgccGCGGcCAGCCGcaGGCAg -3'
miRNA:   3'- aCGGcCGGCGGU----CGUC-GUCGGC--CCGU- -5'
23809 5' -66.7 NC_005261.1 + 2183 0.74 0.1058
Target:  5'- aGUCGG-CGCuCAGCAGCAGCCGGuuGCc -3'
miRNA:   3'- aCGGCCgGCG-GUCGUCGUCGGCC--CGu -5'
23809 5' -66.7 NC_005261.1 + 2251 0.74 0.100613
Target:  5'- gGCCacucaGGCCGCCGGC-GCucguccucGCCGGGCGg -3'
miRNA:   3'- aCGG-----CCGGCGGUCGuCGu-------CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 2370 0.68 0.258195
Target:  5'- gGCCacgcGCCGCC-GCAGCGGCgCGcuGGCGg -3'
miRNA:   3'- aCGGc---CGGCGGuCGUCGUCG-GC--CCGU- -5'
23809 5' -66.7 NC_005261.1 + 2412 0.69 0.246648
Target:  5'- cGCgGGCC-CCGcGCGGCGGC-GGGCc -3'
miRNA:   3'- aCGgCCGGcGGU-CGUCGUCGgCCCGu -5'
23809 5' -66.7 NC_005261.1 + 2451 0.66 0.382249
Target:  5'- cGCCucggGGUCGaaGGCgAGC-GCCGGGCGc -3'
miRNA:   3'- aCGG----CCGGCggUCG-UCGuCGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.