miRNA display CGI


Results 1 - 20 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 77504 0.65 0.395836
Target:  5'- cUGCCGcCCGCCAucgccGCcGCGcccccgcccccgauGCCGGGCu -3'
miRNA:   3'- -ACGGCcGGCGGU-----CGuCGU--------------CGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 31999 0.66 0.359042
Target:  5'- gUGcCCGuGCCGCCgcgcgaguaccGGCAGCGcgugcuGCCGcGGCu -3'
miRNA:   3'- -AC-GGC-CGGCGG-----------UCGUCGU------CGGC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 23796 0.66 0.358285
Target:  5'- cGCCggGGCagGCCGGCuggGGCGGgcuugccCCGGGCGg -3'
miRNA:   3'- aCGG--CCGg-CGGUCG---UCGUC-------GGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 62599 0.66 0.351528
Target:  5'- gGCCGGgaaCCGgCAGCGGUAGgCGGcCAu -3'
miRNA:   3'- aCGGCC---GGCgGUCGUCGUCgGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 129880 0.66 0.351528
Target:  5'- uUGCucuCGGCCGCCAuGCGGaUGGCCuGGUc -3'
miRNA:   3'- -ACG---GCCGGCGGU-CGUC-GUCGGcCCGu -5'
23809 5' -66.7 NC_005261.1 + 5910 0.66 0.359042
Target:  5'- gGCCGGCCgGCUGGCuAGCucGCuCGacGGCAa -3'
miRNA:   3'- aCGGCCGG-CGGUCG-UCGu-CG-GC--CCGU- -5'
23809 5' -66.7 NC_005261.1 + 5283 0.66 0.351528
Target:  5'- gGCCGGCCGC--GguGC-GCgCGGGUc -3'
miRNA:   3'- aCGGCCGGCGguCguCGuCG-GCCCGu -5'
23809 5' -66.7 NC_005261.1 + 55692 0.66 0.359042
Target:  5'- aGCaCGGCgGCCA-CGGCcGCUuGGGCGg -3'
miRNA:   3'- aCG-GCCGgCGGUcGUCGuCGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 33758 0.66 0.359042
Target:  5'- gGCCgGGCCcgcucgcgggGCCcGCGGCGagcGCUGGGCc -3'
miRNA:   3'- aCGG-CCGG----------CGGuCGUCGU---CGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 23853 0.66 0.358285
Target:  5'- cGCCggGGCagGCCGGCuggGGCGGgcuugccCCGGGCGg -3'
miRNA:   3'- aCGG--CCGg-CGGUCG---UCGUC-------GGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 82282 0.66 0.351528
Target:  5'- cGCUGGUCGCgGauGCAGCGcCCGaGGCu -3'
miRNA:   3'- aCGGCCGGCGgU--CGUCGUcGGC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 33529 0.66 0.351528
Target:  5'- cGCUGGCC-CCGGgAGCA-CCagGGGCGc -3'
miRNA:   3'- aCGGCCGGcGGUCgUCGUcGG--CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 94623 0.66 0.359042
Target:  5'- cGCC-GCCGCCGGCGccGUcGUCGGcGCGc -3'
miRNA:   3'- aCGGcCGGCGGUCGU--CGuCGGCC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 20877 0.66 0.359042
Target:  5'- gGCCGGCCaucGCCAGCucGUGGCCGc--- -3'
miRNA:   3'- aCGGCCGG---CGGUCGu-CGUCGGCccgu -5'
23809 5' -66.7 NC_005261.1 + 30780 0.66 0.351528
Target:  5'- aGcCCGGCCGCggCGGUggAGguGCUGGGg- -3'
miRNA:   3'- aC-GGCCGGCG--GUCG--UCguCGGCCCgu -5'
23809 5' -66.7 NC_005261.1 + 23466 0.66 0.358285
Target:  5'- cGCCaGGCC-CgCGGCGGCGagugcgcgggcccGCCuGGGCAg -3'
miRNA:   3'- aCGG-CCGGcG-GUCGUCGU-------------CGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 5104 0.66 0.359042
Target:  5'- cGCCacagcuCCGCCAGCu-CGGCgCGGGCGg -3'
miRNA:   3'- aCGGcc----GGCGGUCGucGUCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 109857 0.66 0.351528
Target:  5'- gUGgCGGCUcCUGGgGGCAGCgGGGCc -3'
miRNA:   3'- -ACgGCCGGcGGUCgUCGUCGgCCCGu -5'
23809 5' -66.7 NC_005261.1 + 70664 0.66 0.351528
Target:  5'- cGCCgcGGCCGCgGGCcGCaccuccAGCCaGGCGu -3'
miRNA:   3'- aCGG--CCGGCGgUCGuCG------UCGGcCCGU- -5'
23809 5' -66.7 NC_005261.1 + 90211 0.66 0.351528
Target:  5'- gGgCGGCggagCGCCcucgcGCGGCGGgCGGGCGc -3'
miRNA:   3'- aCgGCCG----GCGGu----CGUCGUCgGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.