Results 1 - 20 of 576 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23809 | 5' | -66.7 | NC_005261.1 | + | 2603 | 0.79 | 0.047914 |
Target: 5'- aGCC-GCCGUCGGCGGCGgggccGCCGGGCGg -3' miRNA: 3'- aCGGcCGGCGGUCGUCGU-----CGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 77504 | 0.65 | 0.395836 |
Target: 5'- cUGCCGcCCGCCAucgccGCcGCGcccccgcccccgauGCCGGGCu -3' miRNA: 3'- -ACGGCcGGCGGU-----CGuCGU--------------CGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 115407 | 0.77 | 0.058912 |
Target: 5'- cGUCGaCCGCgGGCGGCAGCCGGGg- -3' miRNA: 3'- aCGGCcGGCGgUCGUCGUCGGCCCgu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 42646 | 0.77 | 0.058309 |
Target: 5'- cGCCgcGGCCGCgcggaaccagccaAGCGGCGGCCGGGCc -3' miRNA: 3'- aCGG--CCGGCGg------------UCGUCGUCGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 50177 | 0.78 | 0.057414 |
Target: 5'- cGCgGGCacCGCC-GCAGCAGCCGGuGCAg -3' miRNA: 3'- aCGgCCG--GCGGuCGUCGUCGGCC-CGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 31023 | 0.78 | 0.055953 |
Target: 5'- cGCCGGCCaaaaGCCGGCGcGCcGCCGGGUc -3' miRNA: 3'- aCGGCCGG----CGGUCGU-CGuCGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 4374 | 0.78 | 0.053137 |
Target: 5'- cGcCCGcGCCGCCGaagcGCAcGCGGCCGGGCGg -3' miRNA: 3'- aC-GGC-CGGCGGU----CGU-CGUCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 90776 | 0.78 | 0.053137 |
Target: 5'- cGCCgaGGCCGCU-GCGGCGGCCGGcGCGc -3' miRNA: 3'- aCGG--CCGGCGGuCGUCGUCGGCC-CGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 95610 | 0.78 | 0.052727 |
Target: 5'- gGCCGGCUGCUggaccgcgcgguccAGgAGCGGCUGGGCGa -3' miRNA: 3'- aCGGCCGGCGG--------------UCgUCGUCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 97090 | 0.78 | 0.05046 |
Target: 5'- cGCCGGCUggGCCGGgGGCgccAGCCGGGCc -3' miRNA: 3'- aCGGCCGG--CGGUCgUCG---UCGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 55166 | 0.79 | 0.049171 |
Target: 5'- cGCC-GCCGCCGGCGGCucGCgGGGCGg -3' miRNA: 3'- aCGGcCGGCGGUCGUCGu-CGgCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 2798 | 0.85 | 0.01515 |
Target: 5'- cGCCGGCgGCCGGgAGgGGCCGGGCGg -3' miRNA: 3'- aCGGCCGgCGGUCgUCgUCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 93816 | 0.79 | 0.045493 |
Target: 5'- cGCC-GCCGCCAccgccGCAGCcGCCGGGCGg -3' miRNA: 3'- aCGGcCGGCGGU-----CGUCGuCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 30926 | 0.79 | 0.044328 |
Target: 5'- -cCCGGCCGCCGGC-GCAGCCccucggGGGCGg -3' miRNA: 3'- acGGCCGGCGGUCGuCGUCGG------CCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 33462 | 0.79 | 0.044328 |
Target: 5'- cGCCGcaGCCGCC-GCcGCAGCCGGGCc -3' miRNA: 3'- aCGGC--CGGCGGuCGuCGUCGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 83584 | 0.8 | 0.039952 |
Target: 5'- cGCCcgcGGCCGCCAGCAGCGcgucgcucuccGCCGcGGCGu -3' miRNA: 3'- aCGG---CCGGCGGUCGUCGU-----------CGGC-CCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 101857 | 0.8 | 0.037925 |
Target: 5'- cGCCGGCCGCCuGCAGCAcguccgcgcGCaGGGCGc -3' miRNA: 3'- aCGGCCGGCGGuCGUCGU---------CGgCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 44284 | 0.8 | 0.035073 |
Target: 5'- gGCCcGCCGCCAGCGGCGgGCCaGGGCc -3' miRNA: 3'- aCGGcCGGCGGUCGUCGU-CGG-CCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 16301 | 0.81 | 0.03417 |
Target: 5'- cGUCGGgC-CCAGCGGCGGCCGGGCc -3' miRNA: 3'- aCGGCCgGcGGUCGUCGUCGGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 21790 | 0.81 | 0.03329 |
Target: 5'- cGCgGGCCGCC-GCAGCcgccGGCCGGGCc -3' miRNA: 3'- aCGgCCGGCGGuCGUCG----UCGGCCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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