miRNA display CGI


Results 21 - 40 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 2534 0.76 0.082175
Target:  5'- gGCaguaGGCCGCCAGCGccGCGGCgcUGGGCGc -3'
miRNA:   3'- aCGg---CCGGCGGUCGU--CGUCG--GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 2603 0.79 0.047914
Target:  5'- aGCC-GCCGUCGGCGGCGgggccGCCGGGCGg -3'
miRNA:   3'- aCGGcCGGCGGUCGUCGU-----CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 2687 0.71 0.177409
Target:  5'- cGgCGGCgCGCCGGCuuuuggccGGC-GCCGGGCc -3'
miRNA:   3'- aCgGCCG-GCGGUCG--------UCGuCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 2798 0.85 0.01515
Target:  5'- cGCCGGCgGCCGGgAGgGGCCGGGCGg -3'
miRNA:   3'- aCGGCCGgCGGUCgUCgUCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 2923 0.76 0.078096
Target:  5'- -uCCGGCC-CCAGCAccuccaccgccGCGGCCGGGCu -3'
miRNA:   3'- acGGCCGGcGGUCGU-----------CGUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 3381 0.74 0.098111
Target:  5'- aGCgCGGCCGCCAGCcGC-GCC-GGCAc -3'
miRNA:   3'- aCG-GCCGGCGGUCGuCGuCGGcCCGU- -5'
23809 5' -66.7 NC_005261.1 + 3513 0.76 0.072339
Target:  5'- aGCgCGGCCGCCuccagcGCGGCGGCCGccucGGCGc -3'
miRNA:   3'- aCG-GCCGGCGGu-----CGUCGUCGGC----CCGU- -5'
23809 5' -66.7 NC_005261.1 + 3598 0.68 0.288992
Target:  5'- cGCgGGCCGCgccaAGCAGCucagcuGCCcGGaGCAc -3'
miRNA:   3'- aCGgCCGGCGg---UCGUCGu-----CGG-CC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 3677 0.68 0.27018
Target:  5'- gGCCGGCagGCCGcggcccGCuGCAGCCGaGaGCAc -3'
miRNA:   3'- aCGGCCGg-CGGU------CGuCGUCGGC-C-CGU- -5'
23809 5' -66.7 NC_005261.1 + 3732 0.7 0.206632
Target:  5'- cUGCCGGaCgCGCCGGCGGCGcaccgcGCCGccucuagcgccucgcGGCAg -3'
miRNA:   3'- -ACGGCC-G-GCGGUCGUCGU------CGGC---------------CCGU- -5'
23809 5' -66.7 NC_005261.1 + 3790 0.68 0.282609
Target:  5'- cGCagCGGuCCGCCAGCucgcGCAGCCGcucGCGc -3'
miRNA:   3'- aCG--GCC-GGCGGUCGu---CGUCGGCc--CGU- -5'
23809 5' -66.7 NC_005261.1 + 3834 0.69 0.241036
Target:  5'- gGcCCGGgCGCUGGCGGCAGCgGcgccGGCGc -3'
miRNA:   3'- aC-GGCCgGCGGUCGUCGUCGgC----CCGU- -5'
23809 5' -66.7 NC_005261.1 + 3871 0.7 0.199903
Target:  5'- gGCCGGCgaGCaCGGCGcGCAGCUcGGCGa -3'
miRNA:   3'- aCGGCCGg-CG-GUCGU-CGUCGGcCCGU- -5'
23809 5' -66.7 NC_005261.1 + 3913 0.71 0.169058
Target:  5'- cGcCCGcGCCGCCGGCgccGGCcuCCGGGUAg -3'
miRNA:   3'- aC-GGC-CGGCGGUCG---UCGucGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 4153 0.74 0.108486
Target:  5'- cUGCagcaGGCgCGCCAGCuGCAGguCCGGGCc -3'
miRNA:   3'- -ACGg---CCG-GCGGUCGuCGUC--GGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 4301 0.7 0.221713
Target:  5'- gGCCccgcGGCCGCCgcguAGCGcGCGGCCgccucgcggaucucgGGGCAg -3'
miRNA:   3'- aCGG----CCGGCGG----UCGU-CGUCGG---------------CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 4374 0.78 0.053137
Target:  5'- cGcCCGcGCCGCCGaagcGCAcGCGGCCGGGCGg -3'
miRNA:   3'- aC-GGC-CGGCGGU----CGU-CGUCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 4434 0.68 0.282609
Target:  5'- cGCCGGagggCGUCAGCAGCgGGCCcuccagcGGCGg -3'
miRNA:   3'- aCGGCCg---GCGGUCGUCG-UCGGc------CCGU- -5'
23809 5' -66.7 NC_005261.1 + 4468 0.66 0.374403
Target:  5'- nGgCGGcCCGUCGcGCGGC-GCCGcGGCGu -3'
miRNA:   3'- aCgGCC-GGCGGU-CGUCGuCGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 4524 0.71 0.177409
Target:  5'- cGCgCGGgCGCC-GCGGCGagggcGCCGGGCc -3'
miRNA:   3'- aCG-GCCgGCGGuCGUCGU-----CGGCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.