miRNA display CGI


Results 21 - 40 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 109359 0.66 0.382249
Target:  5'- cGCCGuccaGCCGCUcgAGC-GCGGCCcagaGGGCc -3'
miRNA:   3'- aCGGC----CGGCGG--UCGuCGUCGG----CCCGu -5'
23809 5' -66.7 NC_005261.1 + 18735 0.66 0.381459
Target:  5'- cGCgGGgCGCCccaaaacAGCGGCcccgcagagcagGGCCaGGGCAa -3'
miRNA:   3'- aCGgCCgGCGG-------UCGUCG------------UCGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 112024 0.66 0.381459
Target:  5'- cGCCGcaacaGCCGCCAcguggacgauGCGGgAGCCggccuucGGGCGu -3'
miRNA:   3'- aCGGC-----CGGCGGU----------CGUCgUCGG-------CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 124661 0.66 0.381459
Target:  5'- -cCCGGCCcuccaaaauccugGgCAGCGGCaccucuaccugaGGCUGGGCAg -3'
miRNA:   3'- acGGCCGG-------------CgGUCGUCG------------UCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 51494 0.66 0.374403
Target:  5'- cGCCGcGCCccugaugcucgGCCAGaugcugGGC-GCCGGGCu -3'
miRNA:   3'- aCGGC-CGG-----------CGGUCg-----UCGuCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 99230 0.66 0.374403
Target:  5'- gGCaGGCgCGUCGGCGucGCGcccGCCGGGCc -3'
miRNA:   3'- aCGgCCG-GCGGUCGU--CGU---CGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 4468 0.66 0.374403
Target:  5'- nGgCGGcCCGUCGcGCGGC-GCCGcGGCGu -3'
miRNA:   3'- aCgGCC-GGCGGU-CGUCGuCGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 92340 0.66 0.374403
Target:  5'- cGCgGGCCaCCGGUcacGGUgcaGGCgGGGCAg -3'
miRNA:   3'- aCGgCCGGcGGUCG---UCG---UCGgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 100467 0.66 0.374403
Target:  5'- cGCCcGCCGCgCGGUAGCAcacCCGGuaGCAg -3'
miRNA:   3'- aCGGcCGGCG-GUCGUCGUc--GGCC--CGU- -5'
23809 5' -66.7 NC_005261.1 + 124441 0.66 0.374403
Target:  5'- cGCC-GCCacaCCAGCcGgGGCCGGGUg -3'
miRNA:   3'- aCGGcCGGc--GGUCGuCgUCGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 67062 0.66 0.374403
Target:  5'- gGCgGGCgCGCgCGGgGGCucGCuCGGGCGg -3'
miRNA:   3'- aCGgCCG-GCG-GUCgUCGu-CG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 101429 0.66 0.374403
Target:  5'- cGUCGGCCGCCGa-GGCGGCgCGGu-- -3'
miRNA:   3'- aCGGCCGGCGGUcgUCGUCG-GCCcgu -5'
23809 5' -66.7 NC_005261.1 + 72481 0.66 0.374403
Target:  5'- aGCgCGGCCagcGCCAGgAGC-GCCGcGCGa -3'
miRNA:   3'- aCG-GCCGG---CGGUCgUCGuCGGCcCGU- -5'
23809 5' -66.7 NC_005261.1 + 117292 0.66 0.374403
Target:  5'- cGCCGaGcCCGCCcucgAGCccAGCcccGGCgCGGGCAg -3'
miRNA:   3'- aCGGC-C-GGCGG----UCG--UCG---UCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 113910 0.66 0.374403
Target:  5'- cGCgaUGGCCGa-GGCAGCGGgCGcGGCGa -3'
miRNA:   3'- aCG--GCCGGCggUCGUCGUCgGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 84659 0.66 0.374403
Target:  5'- gGCUGgcGCCGCCcGCGcccGCGGCCGcGCAc -3'
miRNA:   3'- aCGGC--CGGCGGuCGU---CGUCGGCcCGU- -5'
23809 5' -66.7 NC_005261.1 + 49091 0.66 0.372847
Target:  5'- cGCgGGcCCGCUGagcgcgcGCAGCAGCuccucgagcgcggCGGGCGg -3'
miRNA:   3'- aCGgCC-GGCGGU-------CGUCGUCG-------------GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 76130 0.66 0.369748
Target:  5'- cGCCGG-CGCCcgucguggaggucguGGCGGCGcacgacGCCGuGGCGc -3'
miRNA:   3'- aCGGCCgGCGG---------------UCGUCGU------CGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 135434 0.66 0.366667
Target:  5'- cGCuCGcacGCCGCCca-GGCGGCgCGGGCGc -3'
miRNA:   3'- aCG-GC---CGGCGGucgUCGUCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 18407 0.66 0.366667
Target:  5'- cGCgGGCCucggagaccCCAGC-GCAgacguccucGCCGGGCAg -3'
miRNA:   3'- aCGgCCGGc--------GGUCGuCGU---------CGGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.