miRNA display CGI


Results 41 - 60 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 88447 0.66 0.366667
Target:  5'- cUGCUGGCCGCgCcgcgugAGCGuGUGGgCGGGCc -3'
miRNA:   3'- -ACGGCCGGCG-G------UCGU-CGUCgGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 50987 0.66 0.366667
Target:  5'- -cUCGGCCGaCGGCGGC-GCgUGGGCGc -3'
miRNA:   3'- acGGCCGGCgGUCGUCGuCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 92596 0.66 0.366667
Target:  5'- aGCgCaGCCGCUcGCGGCGcguGCCGGGg- -3'
miRNA:   3'- aCG-GcCGGCGGuCGUCGU---CGGCCCgu -5'
23809 5' -66.7 NC_005261.1 + 27774 0.66 0.366667
Target:  5'- aGCCGGCCuaGCUAGcCAGCcuuGCCGucgaGCGa -3'
miRNA:   3'- aCGGCCGG--CGGUC-GUCGu--CGGCc---CGU- -5'
23809 5' -66.7 NC_005261.1 + 135434 0.66 0.366667
Target:  5'- cGCuCGcacGCCGCCca-GGCGGCgCGGGCGc -3'
miRNA:   3'- aCG-GC---CGGCGGucgUCGUCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 5709 0.66 0.366667
Target:  5'- cGCCGGCCcCCuuucGCGGagaGGCCGG-CGg -3'
miRNA:   3'- aCGGCCGGcGGu---CGUCg--UCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 18407 0.66 0.366667
Target:  5'- cGCgGGCCucggagaccCCAGC-GCAgacguccucGCCGGGCAg -3'
miRNA:   3'- aCGgCCGGc--------GGUCGuCGU---------CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 55981 0.66 0.366667
Target:  5'- cGCCGccGUCGCCAuCGGCAaCCGcGGCGg -3'
miRNA:   3'- aCGGC--CGGCGGUcGUCGUcGGC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 69663 0.66 0.366667
Target:  5'- -aCCGGCgGCUGGgGGUGGCCGG-CAu -3'
miRNA:   3'- acGGCCGgCGGUCgUCGUCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 122323 0.66 0.362079
Target:  5'- gGCCGGCgGUCAgguggcGCucgcagagcucgccuGGCGGCCGcGGCu -3'
miRNA:   3'- aCGGCCGgCGGU------CG---------------UCGUCGGC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 20877 0.66 0.359042
Target:  5'- gGCCGGCCaucGCCAGCucGUGGCCGc--- -3'
miRNA:   3'- aCGGCCGG---CGGUCGu-CGUCGGCccgu -5'
23809 5' -66.7 NC_005261.1 + 94623 0.66 0.359042
Target:  5'- cGCC-GCCGCCGGCGccGUcGUCGGcGCGc -3'
miRNA:   3'- aCGGcCGGCGGUCGU--CGuCGGCC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 33758 0.66 0.359042
Target:  5'- gGCCgGGCCcgcucgcgggGCCcGCGGCGagcGCUGGGCc -3'
miRNA:   3'- aCGG-CCGG----------CGGuCGUCGU---CGGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 55692 0.66 0.359042
Target:  5'- aGCaCGGCgGCCA-CGGCcGCUuGGGCGg -3'
miRNA:   3'- aCG-GCCGgCGGUcGUCGuCGG-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 104061 0.66 0.359042
Target:  5'- cGCCucGGCCGCgAGCgcguccagcucGGCGGacaGGGCGg -3'
miRNA:   3'- aCGG--CCGGCGgUCG-----------UCGUCgg-CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 5910 0.66 0.359042
Target:  5'- gGCCGGCCgGCUGGCuAGCucGCuCGacGGCAa -3'
miRNA:   3'- aCGGCCGG-CGGUCG-UCGu-CG-GC--CCGU- -5'
23809 5' -66.7 NC_005261.1 + 97855 0.66 0.359042
Target:  5'- nGCC-GCCGCggCAGC-GCGGCCGG-CAu -3'
miRNA:   3'- aCGGcCGGCG--GUCGuCGUCGGCCcGU- -5'
23809 5' -66.7 NC_005261.1 + 5104 0.66 0.359042
Target:  5'- cGCCacagcuCCGCCAGCu-CGGCgCGGGCGg -3'
miRNA:   3'- aCGGcc----GGCGGUCGucGUCG-GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 31999 0.66 0.359042
Target:  5'- gUGcCCGuGCCGCCgcgcgaguaccGGCAGCGcgugcuGCCGcGGCu -3'
miRNA:   3'- -AC-GGC-CGGCGG-----------UCGUCGU------CGGC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 52706 0.66 0.359042
Target:  5'- cUGCCGGCCGaugaaagugaCGagauGCGGC-GCCGcGGCGc -3'
miRNA:   3'- -ACGGCCGGCg---------GU----CGUCGuCGGC-CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.