Results 41 - 60 of 576 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23809 | 5' | -66.7 | NC_005261.1 | + | 109167 | 0.76 | 0.080111 |
Target: 5'- gGCCGGgcagguucuCCGCUAGCAGCGccgcGUCGGGCGu -3' miRNA: 3'- aCGGCC---------GGCGGUCGUCGU----CGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 105130 | 0.76 | 0.081967 |
Target: 5'- cGCgGGCCGCCGGCGcgcgcagguccucGCGGCUcgaGGGCGg -3' miRNA: 3'- aCGgCCGGCGGUCGU-------------CGUCGG---CCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 78884 | 0.76 | 0.082175 |
Target: 5'- aGCCGGuUCGCCAGCAGCGGCCc-GCc -3' miRNA: 3'- aCGGCC-GGCGGUCGUCGUCGGccCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 2534 | 0.76 | 0.082175 |
Target: 5'- gGCaguaGGCCGCCAGCGccGCGGCgcUGGGCGc -3' miRNA: 3'- aCGg---CCGGCGGUCGU--CGUCG--GCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 49243 | 0.76 | 0.082175 |
Target: 5'- gGUCGGCCGCCGccGCGGCGGCguCGGcGCGc -3' miRNA: 3'- aCGGCCGGCGGU--CGUCGUCG--GCC-CGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 59724 | 0.75 | 0.086458 |
Target: 5'- cGCCGGgCGgCAGCGGCGGCgCGcGGCc -3' miRNA: 3'- aCGGCCgGCgGUCGUCGUCG-GC-CCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 98047 | 0.75 | 0.088678 |
Target: 5'- cUGgCGGCCGCgGGCGGCGGgaccgCGGGCGg -3' miRNA: 3'- -ACgGCCGGCGgUCGUCGUCg----GCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 13081 | 0.75 | 0.088678 |
Target: 5'- cGCCGGcCCGUCGGCgGGCGGC-GGGCu -3' miRNA: 3'- aCGGCC-GGCGGUCG-UCGUCGgCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 56146 | 0.75 | 0.088678 |
Target: 5'- cGCgGGCCGaggguggCGGCAGCGGCgGGGCc -3' miRNA: 3'- aCGgCCGGCg------GUCGUCGUCGgCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 1501 | 0.75 | 0.088678 |
Target: 5'- cGCC-GCgGCCGGCAGCucGUCGGGCGc -3' miRNA: 3'- aCGGcCGgCGGUCGUCGu-CGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 106258 | 0.75 | 0.090952 |
Target: 5'- gGCCGccGCCGCC-GCuGCcGCCGGGCGg -3' miRNA: 3'- aCGGC--CGGCGGuCGuCGuCGGCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 111457 | 0.75 | 0.093281 |
Target: 5'- aGCCGGgCGCCGGCgaggccaaaaGGCGGgCGGGUg -3' miRNA: 3'- aCGGCCgGCGGUCG----------UCGUCgGCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 131417 | 0.75 | 0.095667 |
Target: 5'- cGCC-GCUGCCGGCAGCGgcGCCGGcGCc -3' miRNA: 3'- aCGGcCGGCGGUCGUCGU--CGGCC-CGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 103855 | 0.75 | 0.095667 |
Target: 5'- cGCgCGaGCCG-CGGCGGCGGCgGGGCGg -3' miRNA: 3'- aCG-GC-CGGCgGUCGUCGUCGgCCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 127626 | 0.75 | 0.095667 |
Target: 5'- gGCCGGCCGgacgcgaCGGCGGCGgcGCCGGGgGg -3' miRNA: 3'- aCGGCCGGCg------GUCGUCGU--CGGCCCgU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 3381 | 0.74 | 0.098111 |
Target: 5'- aGCgCGGCCGCCAGCcGC-GCC-GGCAc -3' miRNA: 3'- aCG-GCCGGCGGUCGuCGuCGGcCCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 101395 | 0.74 | 0.098111 |
Target: 5'- --aCGGCCGCCAGCAGCAgcGCCGcuuGCGu -3' miRNA: 3'- acgGCCGGCGGUCGUCGU--CGGCc--CGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 30368 | 0.74 | 0.098111 |
Target: 5'- gGCCGGCgCGCCgGGCGccGCGGCgCGGGUg -3' miRNA: 3'- aCGGCCG-GCGG-UCGU--CGUCG-GCCCGu -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 1395 | 0.74 | 0.100613 |
Target: 5'- cGCCGGgCGCCgcggccgcGGCGGCGGCgGgGGCGg -3' miRNA: 3'- aCGGCCgGCGG--------UCGUCGUCGgC-CCGU- -5' |
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23809 | 5' | -66.7 | NC_005261.1 | + | 31466 | 0.74 | 0.100613 |
Target: 5'- cGCCGGCgGCCugAGUGGCcGCCGGuGCGc -3' miRNA: 3'- aCGGCCGgCGG--UCGUCGuCGGCC-CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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