miRNA display CGI


Results 41 - 60 of 576 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23809 5' -66.7 NC_005261.1 + 109167 0.76 0.080111
Target:  5'- gGCCGGgcagguucuCCGCUAGCAGCGccgcGUCGGGCGu -3'
miRNA:   3'- aCGGCC---------GGCGGUCGUCGU----CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 105130 0.76 0.081967
Target:  5'- cGCgGGCCGCCGGCGcgcgcagguccucGCGGCUcgaGGGCGg -3'
miRNA:   3'- aCGgCCGGCGGUCGU-------------CGUCGG---CCCGU- -5'
23809 5' -66.7 NC_005261.1 + 78884 0.76 0.082175
Target:  5'- aGCCGGuUCGCCAGCAGCGGCCc-GCc -3'
miRNA:   3'- aCGGCC-GGCGGUCGUCGUCGGccCGu -5'
23809 5' -66.7 NC_005261.1 + 2534 0.76 0.082175
Target:  5'- gGCaguaGGCCGCCAGCGccGCGGCgcUGGGCGc -3'
miRNA:   3'- aCGg---CCGGCGGUCGU--CGUCG--GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 49243 0.76 0.082175
Target:  5'- gGUCGGCCGCCGccGCGGCGGCguCGGcGCGc -3'
miRNA:   3'- aCGGCCGGCGGU--CGUCGUCG--GCC-CGU- -5'
23809 5' -66.7 NC_005261.1 + 59724 0.75 0.086458
Target:  5'- cGCCGGgCGgCAGCGGCGGCgCGcGGCc -3'
miRNA:   3'- aCGGCCgGCgGUCGUCGUCG-GC-CCGu -5'
23809 5' -66.7 NC_005261.1 + 98047 0.75 0.088678
Target:  5'- cUGgCGGCCGCgGGCGGCGGgaccgCGGGCGg -3'
miRNA:   3'- -ACgGCCGGCGgUCGUCGUCg----GCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 13081 0.75 0.088678
Target:  5'- cGCCGGcCCGUCGGCgGGCGGC-GGGCu -3'
miRNA:   3'- aCGGCC-GGCGGUCG-UCGUCGgCCCGu -5'
23809 5' -66.7 NC_005261.1 + 56146 0.75 0.088678
Target:  5'- cGCgGGCCGaggguggCGGCAGCGGCgGGGCc -3'
miRNA:   3'- aCGgCCGGCg------GUCGUCGUCGgCCCGu -5'
23809 5' -66.7 NC_005261.1 + 1501 0.75 0.088678
Target:  5'- cGCC-GCgGCCGGCAGCucGUCGGGCGc -3'
miRNA:   3'- aCGGcCGgCGGUCGUCGu-CGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 106258 0.75 0.090952
Target:  5'- gGCCGccGCCGCC-GCuGCcGCCGGGCGg -3'
miRNA:   3'- aCGGC--CGGCGGuCGuCGuCGGCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 111457 0.75 0.093281
Target:  5'- aGCCGGgCGCCGGCgaggccaaaaGGCGGgCGGGUg -3'
miRNA:   3'- aCGGCCgGCGGUCG----------UCGUCgGCCCGu -5'
23809 5' -66.7 NC_005261.1 + 131417 0.75 0.095667
Target:  5'- cGCC-GCUGCCGGCAGCGgcGCCGGcGCc -3'
miRNA:   3'- aCGGcCGGCGGUCGUCGU--CGGCC-CGu -5'
23809 5' -66.7 NC_005261.1 + 103855 0.75 0.095667
Target:  5'- cGCgCGaGCCG-CGGCGGCGGCgGGGCGg -3'
miRNA:   3'- aCG-GC-CGGCgGUCGUCGUCGgCCCGU- -5'
23809 5' -66.7 NC_005261.1 + 127626 0.75 0.095667
Target:  5'- gGCCGGCCGgacgcgaCGGCGGCGgcGCCGGGgGg -3'
miRNA:   3'- aCGGCCGGCg------GUCGUCGU--CGGCCCgU- -5'
23809 5' -66.7 NC_005261.1 + 3381 0.74 0.098111
Target:  5'- aGCgCGGCCGCCAGCcGC-GCC-GGCAc -3'
miRNA:   3'- aCG-GCCGGCGGUCGuCGuCGGcCCGU- -5'
23809 5' -66.7 NC_005261.1 + 101395 0.74 0.098111
Target:  5'- --aCGGCCGCCAGCAGCAgcGCCGcuuGCGu -3'
miRNA:   3'- acgGCCGGCGGUCGUCGU--CGGCc--CGU- -5'
23809 5' -66.7 NC_005261.1 + 30368 0.74 0.098111
Target:  5'- gGCCGGCgCGCCgGGCGccGCGGCgCGGGUg -3'
miRNA:   3'- aCGGCCG-GCGG-UCGU--CGUCG-GCCCGu -5'
23809 5' -66.7 NC_005261.1 + 1395 0.74 0.100613
Target:  5'- cGCCGGgCGCCgcggccgcGGCGGCGGCgGgGGCGg -3'
miRNA:   3'- aCGGCCgGCGG--------UCGUCGUCGgC-CCGU- -5'
23809 5' -66.7 NC_005261.1 + 31466 0.74 0.100613
Target:  5'- cGCCGGCgGCCugAGUGGCcGCCGGuGCGc -3'
miRNA:   3'- aCGGCCGgCGG--UCGUCGuCGGCC-CGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.