miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23810 5' -61.9 NC_005261.1 + 4320 0.66 0.616005
Target:  5'- aGCGCGCggccgCCUCGCggaucucgggGCagucccagaGGCCCUCgCGa -3'
miRNA:   3'- cUGCGCGa----GGAGCGa---------CG---------UCGGGAG-GU- -5'
23810 5' -61.9 NC_005261.1 + 10440 0.66 0.616005
Target:  5'- gGACGCGUgCUgggaggcgcUGCUGCAGCUCUCg- -3'
miRNA:   3'- -CUGCGCGaGGa--------GCGACGUCGGGAGgu -5'
23810 5' -61.9 NC_005261.1 + 31836 0.66 0.616005
Target:  5'- uGGCGCGCgccgugcuggCCUCGCgGCgcgucuucgGGCCCggcgCCu -3'
miRNA:   3'- -CUGCGCGa---------GGAGCGaCG---------UCGGGa---GGu -5'
23810 5' -61.9 NC_005261.1 + 101728 0.66 0.614003
Target:  5'- aGCGCGCccgcgaucagggCCUCGCU-CGGCagCUCCAg -3'
miRNA:   3'- cUGCGCGa-----------GGAGCGAcGUCGg-GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 2134 0.66 0.605998
Target:  5'- aGCGCGCUCa-CGUccgGCGcGCCCgUCCAg -3'
miRNA:   3'- cUGCGCGAGgaGCGa--CGU-CGGG-AGGU- -5'
23810 5' -61.9 NC_005261.1 + 122813 0.66 0.605998
Target:  5'- cGCGCGC-CCgccagcacccgCGCUGCGGCgcggucauaCUCCAg -3'
miRNA:   3'- cUGCGCGaGGa----------GCGACGUCGg--------GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 105140 0.66 0.605998
Target:  5'- cGGCGCGCgcaggUCCUCGCggcucgaggGCGG-CgUCCAc -3'
miRNA:   3'- -CUGCGCG-----AGGAGCGa--------CGUCgGgAGGU- -5'
23810 5' -61.9 NC_005261.1 + 60898 0.66 0.596009
Target:  5'- gGGCGagcaGUUCCU-GCUcuacCGGCCCUCCAc -3'
miRNA:   3'- -CUGCg---CGAGGAgCGAc---GUCGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 132367 0.66 0.596009
Target:  5'- cGGCGCGCUCgCcgCGCUcGCGGCgCUguUCCc -3'
miRNA:   3'- -CUGCGCGAG-Ga-GCGA-CGUCG-GG--AGGu -5'
23810 5' -61.9 NC_005261.1 + 120620 0.66 0.596009
Target:  5'- cGugGgGCUCCU-GCUggugGCGGCCCUgUg -3'
miRNA:   3'- -CugCgCGAGGAgCGA----CGUCGGGAgGu -5'
23810 5' -61.9 NC_005261.1 + 103250 0.66 0.596009
Target:  5'- cGCGCGC-CCgcgucCGCgcaCAGCCgCUCCAg -3'
miRNA:   3'- cUGCGCGaGGa----GCGac-GUCGG-GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 44720 0.66 0.596009
Target:  5'- uGACGCGCgCagggCGCUGCAGCugggCC-CCGa -3'
miRNA:   3'- -CUGCGCGaGga--GCGACGUCG----GGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 104213 0.66 0.586046
Target:  5'- --gGCGCUCgCgCGCgGCGcgcaccguGCCCUCCAg -3'
miRNA:   3'- cugCGCGAG-GaGCGaCGU--------CGGGAGGU- -5'
23810 5' -61.9 NC_005261.1 + 34045 0.66 0.586046
Target:  5'- cGCGCGCUgCCcUGcCUGCAcGCCUUCUg -3'
miRNA:   3'- cUGCGCGA-GGaGC-GACGU-CGGGAGGu -5'
23810 5' -61.9 NC_005261.1 + 119266 0.66 0.586046
Target:  5'- uGCGCGCUCCugcUCGCUGggcgggGGCUCgCCGa -3'
miRNA:   3'- cUGCGCGAGG---AGCGACg-----UCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 100879 0.66 0.586046
Target:  5'- aGCGCGCgcagccCCUCGUacGCGGCCUcgCCGc -3'
miRNA:   3'- cUGCGCGa-----GGAGCGa-CGUCGGGa-GGU- -5'
23810 5' -61.9 NC_005261.1 + 68303 0.66 0.586046
Target:  5'- gGGCGCGgaCCUC--UGCGGCCgCUUCGa -3'
miRNA:   3'- -CUGCGCgaGGAGcgACGUCGG-GAGGU- -5'
23810 5' -61.9 NC_005261.1 + 130535 0.66 0.580083
Target:  5'- cGCGCccGCUCgUCGCguuuuaucugcuggGCGGCCCgCCGg -3'
miRNA:   3'- cUGCG--CGAGgAGCGa-------------CGUCGGGaGGU- -5'
23810 5' -61.9 NC_005261.1 + 75655 0.66 0.576115
Target:  5'- cGGCGCGUUCCUgGCgcgcgcGCAGaaCCUCUu -3'
miRNA:   3'- -CUGCGCGAGGAgCGa-----CGUCg-GGAGGu -5'
23810 5' -61.9 NC_005261.1 + 62309 0.66 0.576115
Target:  5'- gGGCGCGCggcggCCcCGCgguccccCAGCgCCUCCAc -3'
miRNA:   3'- -CUGCGCGa----GGaGCGac-----GUCG-GGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.