miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 50012 0.66 0.661174
Target:  5'- gCCGcCAGCgCGCGGGcgcccAGCCGC-CgCGCGa -3'
miRNA:   3'- gGGU-GUCG-GCGCUC-----UCGGCGaG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 61213 0.66 0.680845
Target:  5'- cUCCGCGGuuGCGAucG-CGCUCgGCGu -3'
miRNA:   3'- -GGGUGUCggCGCUcuCgGCGAGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 29824 0.66 0.671024
Target:  5'- gCCCGC-GCCGCGcucgccGAGCUGCgcgCCGu- -3'
miRNA:   3'- -GGGUGuCGGCGCu-----CUCGGCGa--GGUgc -5'
23813 3' -60.9 NC_005261.1 + 106135 0.66 0.658214
Target:  5'- gCCgGCAacgccggacaugguGCCGCcuc-GCCGCUCCGCGc -3'
miRNA:   3'- -GGgUGU--------------CGGCGcucuCGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 71439 0.66 0.661174
Target:  5'- gCCCGCGGCgCGC-AGccGCCGcCUCC-CGg -3'
miRNA:   3'- -GGGUGUCG-GCGcUCu-CGGC-GAGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 34336 0.66 0.671024
Target:  5'- cCCCaaggggccgggGCGGCCGaCGGGGccgggcGCCGCgcggcgCCGCGc -3'
miRNA:   3'- -GGG-----------UGUCGGC-GCUCU------CGGCGa-----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 110959 0.66 0.671024
Target:  5'- gCCCAC--CCGgGAGAGCUGCauguacgCCGCc -3'
miRNA:   3'- -GGGUGucGGCgCUCUCGGCGa------GGUGc -5'
23813 3' -60.9 NC_005261.1 + 2799 0.66 0.680845
Target:  5'- gCCgGCGGCCGgGAgGGGCCGggCgGCc -3'
miRNA:   3'- -GGgUGUCGGCgCU-CUCGGCgaGgUGc -5'
23813 3' -60.9 NC_005261.1 + 29662 0.66 0.680845
Target:  5'- gCCAUGGCCGCGcAGAacgcgcugugGgCGCUgCCGCa -3'
miRNA:   3'- gGGUGUCGGCGC-UCU----------CgGCGA-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 110 0.66 0.671024
Target:  5'- cCCCGCcGcCCGCGccGGcGCCGCcCCugGu -3'
miRNA:   3'- -GGGUGuC-GGCGC--UCuCGGCGaGGugC- -5'
23813 3' -60.9 NC_005261.1 + 60262 0.66 0.671024
Target:  5'- gCgGCGGCCGUGaAGAGgCGC-CCGgGg -3'
miRNA:   3'- gGgUGUCGGCGC-UCUCgGCGaGGUgC- -5'
23813 3' -60.9 NC_005261.1 + 81474 0.66 0.661174
Target:  5'- gCCCAC-GCCGCccagagcAGGGCCGCggcuagCGCGg -3'
miRNA:   3'- -GGGUGuCGGCGc------UCUCGGCGag----GUGC- -5'
23813 3' -60.9 NC_005261.1 + 89171 0.66 0.661174
Target:  5'- aCUGCA-CCGCGgacaaccuGGAGCCGCU-CGCGg -3'
miRNA:   3'- gGGUGUcGGCGC--------UCUCGGCGAgGUGC- -5'
23813 3' -60.9 NC_005261.1 + 67534 0.66 0.671024
Target:  5'- gCCCGCGGCgGCGAacGUCGCgUCGCc -3'
miRNA:   3'- -GGGUGUCGgCGCUcuCGGCGaGGUGc -5'
23813 3' -60.9 NC_005261.1 + 121642 0.66 0.719672
Target:  5'- gCCGCcGCCgGCGAGcgcgGGCUG-UCCGCGu -3'
miRNA:   3'- gGGUGuCGG-CGCUC----UCGGCgAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 58423 0.66 0.671024
Target:  5'- aCUGCAGCCGcCGcGAGaaGC-CCACGc -3'
miRNA:   3'- gGGUGUCGGC-GCuCUCggCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 137793 0.66 0.671024
Target:  5'- cCCCGCcGcCCGCGccGGcGCCGCcCCugGu -3'
miRNA:   3'- -GGGUGuC-GGCGC--UCuCGGCGaGGugC- -5'
23813 3' -60.9 NC_005261.1 + 94256 0.66 0.661174
Target:  5'- gCCACGG-CGC-AGGGCgGCgCCGCGa -3'
miRNA:   3'- gGGUGUCgGCGcUCUCGgCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 51653 0.66 0.674956
Target:  5'- gCCCGCcuucggcacgcuaguGGCCGCGAGcugcaucgcGGUCGCcgCgCACGa -3'
miRNA:   3'- -GGGUG---------------UCGGCGCUC---------UCGGCGa-G-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 45031 0.66 0.660187
Target:  5'- uCCCGCgcuuccucugcgaGGuCCGCGAaauccuggcgGGGCCGC-CCACu -3'
miRNA:   3'- -GGGUG-------------UC-GGCGCU----------CUCGGCGaGGUGc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.