miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 110 0.66 0.671024
Target:  5'- cCCCGCcGcCCGCGccGGcGCCGCcCCugGu -3'
miRNA:   3'- -GGGUGuC-GGCGC--UCuCGGCGaGGugC- -5'
23813 3' -60.9 NC_005261.1 + 194 0.69 0.533707
Target:  5'- uCCCGgGGCCaGCG-GuGCCGCcgCCGCc -3'
miRNA:   3'- -GGGUgUCGG-CGCuCuCGGCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 435 0.71 0.424487
Target:  5'- gCCCACGGaCCGggacggggaCGGGGGCCGCgacggCCGgCGg -3'
miRNA:   3'- -GGGUGUC-GGC---------GCUCUCGGCGa----GGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 640 0.67 0.601874
Target:  5'- gCgGCGGCCGCcAGcGCCGCgUCCcCGg -3'
miRNA:   3'- gGgUGUCGGCGcUCuCGGCG-AGGuGC- -5'
23813 3' -60.9 NC_005261.1 + 1176 0.67 0.651302
Target:  5'- gCCCGC-GCCGCGgccGGGGCCGgggCCGgGc -3'
miRNA:   3'- -GGGUGuCGGCGC---UCUCGGCga-GGUgC- -5'
23813 3' -60.9 NC_005261.1 + 1403 0.7 0.433089
Target:  5'- gCCGCGGCCGCGgcggcggcgGGGGCgGCgcCCGCc -3'
miRNA:   3'- gGGUGUCGGCGC---------UCUCGgCGa-GGUGc -5'
23813 3' -60.9 NC_005261.1 + 1502 0.68 0.552958
Target:  5'- gCCGCGGCCGgcagcucguCGGGcGCCaGCUCCAgCGc -3'
miRNA:   3'- gGGUGUCGGC---------GCUCuCGG-CGAGGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 1797 0.69 0.52417
Target:  5'- gCCGCAGCgGCGgcgccccgggguAGAGCCGCgcguaaGCGg -3'
miRNA:   3'- gGGUGUCGgCGC------------UCUCGGCGagg---UGC- -5'
23813 3' -60.9 NC_005261.1 + 2208 0.68 0.582201
Target:  5'- gCCCagcgccgcgaGCAGgUGCGAGAGCC-CgCCGCGc -3'
miRNA:   3'- -GGG----------UGUCgGCGCUCUCGGcGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 2381 0.69 0.533707
Target:  5'- gCCGCAGCgGCGcgcuggcggcGAGCgCGC-CCGCGg -3'
miRNA:   3'- gGGUGUCGgCGCu---------CUCG-GCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 2418 0.66 0.690628
Target:  5'- cCCCGC-GCgGCGGcGGGCCGCgaucucggCCAgCGc -3'
miRNA:   3'- -GGGUGuCGgCGCU-CUCGGCGa-------GGU-GC- -5'
23813 3' -60.9 NC_005261.1 + 2505 0.66 0.704246
Target:  5'- gUCCGCgAGCCGCGccgcgaccucggggcGGcaguaGGCCGCcagcgCCGCGg -3'
miRNA:   3'- -GGGUG-UCGGCGC---------------UC-----UCGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 2582 0.66 0.690628
Target:  5'- cCCCggGCGGCaCGCGgcGGaAGCCGCcgUCgGCGg -3'
miRNA:   3'- -GGG--UGUCG-GCGC--UC-UCGGCG--AGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 2799 0.66 0.680845
Target:  5'- gCCgGCGGCCGgGAgGGGCCGggCgGCc -3'
miRNA:   3'- -GGgUGUCGGCgCU-CUCGGCgaGgUGc -5'
23813 3' -60.9 NC_005261.1 + 3369 0.76 0.198611
Target:  5'- uUCAgGGCCGCGAGcgcGGCCGCcagCCGCGc -3'
miRNA:   3'- gGGUgUCGGCGCUC---UCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 3441 0.69 0.52417
Target:  5'- gUCCagGCGGgCGCGcGGGCCGCcgcgCCGCGc -3'
miRNA:   3'- -GGG--UGUCgGCGCuCUCGGCGa---GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 3672 0.67 0.641415
Target:  5'- gCCGCGGCCG-GcAG-GCCGCggcCCGCu -3'
miRNA:   3'- gGGUGUCGGCgC-UCuCGGCGa--GGUGc -5'
23813 3' -60.9 NC_005261.1 + 3797 0.7 0.450595
Target:  5'- gUCCGcCAGCuCGCGc-AGCCGCUCgCGCGc -3'
miRNA:   3'- -GGGU-GUCG-GCGCucUCGGCGAG-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 3864 0.67 0.631522
Target:  5'- gCCgCGCGGCCgGCGAGcacGGCgcgcaGCUCgGCGa -3'
miRNA:   3'- -GG-GUGUCGG-CGCUC---UCGg----CGAGgUGC- -5'
23813 3' -60.9 NC_005261.1 + 4290 0.74 0.282108
Target:  5'- -aCACGGCCGCGGGccCCGCggccgCCGCGu -3'
miRNA:   3'- ggGUGUCGGCGCUCucGGCGa----GGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.