miRNA display CGI


Results 1 - 20 of 381 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23813 3' -60.9 NC_005261.1 + 44854 0.84 0.060633
Target:  5'- gCCGCAGCCGCGAGGaagagcgccGCCGCgagcgCCGCGg -3'
miRNA:   3'- gGGUGUCGGCGCUCU---------CGGCGa----GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 116517 0.83 0.070866
Target:  5'- gCCGCGGCggCGCGAGGcccGCCGCUCCGCGc -3'
miRNA:   3'- gGGUGUCG--GCGCUCU---CGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 4928 0.82 0.078591
Target:  5'- gCCGCGGCCGCGAGcGcCCGCgCCGCGg -3'
miRNA:   3'- gGGUGUCGGCGCUCuC-GGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 100694 0.82 0.078591
Target:  5'- aCCGCGGCCGCGGcgcgcgccgcccGAGCCGCggCCGCGc -3'
miRNA:   3'- gGGUGUCGGCGCU------------CUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 102291 0.8 0.109622
Target:  5'- gCCAgCGGCCGCGGGucguAGCCGCgcgCCGCGg -3'
miRNA:   3'- gGGU-GUCGGCGCUC----UCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 82301 0.8 0.114446
Target:  5'- gCCCGaGGCUGUccaucgagcgcuucGAGAGCCGCUCCGCGu -3'
miRNA:   3'- -GGGUgUCGGCG--------------CUCUCGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 104819 0.79 0.127544
Target:  5'- cUCCGCAGCgGCGucgcGGGGCCGCgCCACGc -3'
miRNA:   3'- -GGGUGUCGgCGC----UCUCGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 50107 0.79 0.130455
Target:  5'- gCCCGC-GCCGCGcAGGGCCGCcagcaggUCCACa -3'
miRNA:   3'- -GGGUGuCGGCGC-UCUCGGCG-------AGGUGc -5'
23813 3' -60.9 NC_005261.1 + 118397 0.79 0.134097
Target:  5'- gCUgGCGGCCGCGGGcGCCGCagCCGCGc -3'
miRNA:   3'- -GGgUGUCGGCGCUCuCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 124748 0.78 0.155657
Target:  5'- cCCCGCAGCCGC-AGcGGCCGcCUCCAgGc -3'
miRNA:   3'- -GGGUGUCGGCGcUC-UCGGC-GAGGUgC- -5'
23813 3' -60.9 NC_005261.1 + 97118 0.78 0.159543
Target:  5'- gCCGCGGCCG-GAGGcGCCGCggCCACGc -3'
miRNA:   3'- gGGUGUCGGCgCUCU-CGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 72969 0.78 0.159543
Target:  5'- gCCCGCcGCCGCGGGGGuCCGCgagCGCGg -3'
miRNA:   3'- -GGGUGuCGGCGCUCUC-GGCGag-GUGC- -5'
23813 3' -60.9 NC_005261.1 + 58230 0.77 0.171728
Target:  5'- gCCCGCGGCgGCGGGGuccucggccauGCCGCgCCGCGc -3'
miRNA:   3'- -GGGUGUCGgCGCUCU-----------CGGCGaGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 105207 0.77 0.184739
Target:  5'- gUCCGCuuucccGCCGCGcGGGCCGCggCCGCGg -3'
miRNA:   3'- -GGGUGu-----CGGCGCuCUCGGCGa-GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 60938 0.76 0.193889
Target:  5'- aCCCGCgGGCCGUGGcccGAGCgGCUCUACa -3'
miRNA:   3'- -GGGUG-UCGGCGCU---CUCGgCGAGGUGc -5'
23813 3' -60.9 NC_005261.1 + 3369 0.76 0.198611
Target:  5'- uUCAgGGCCGCGAGcgcGGCCGCcagCCGCGc -3'
miRNA:   3'- gGGUgUCGGCGCUC---UCGGCGa--GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 42167 0.76 0.213383
Target:  5'- gCCggaaGCgAGCCGUGGacgcagggcgcGAGCCGCUCCACGg -3'
miRNA:   3'- -GGg---UG-UCGGCGCU-----------CUCGGCGAGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 93829 0.76 0.217995
Target:  5'- gCCGCAGCCGcCGGGcggcGCCGCcgagcagUCCACGa -3'
miRNA:   3'- gGGUGUCGGC-GCUCu---CGGCG-------AGGUGC- -5'
23813 3' -60.9 NC_005261.1 + 99467 0.76 0.217995
Target:  5'- aCCCGCGGCgGCGcuGGCCGCUgcggccagcgccgCCGCGu -3'
miRNA:   3'- -GGGUGUCGgCGCucUCGGCGA-------------GGUGC- -5'
23813 3' -60.9 NC_005261.1 + 14761 0.76 0.218513
Target:  5'- gCCGC-GCCGCGAcagggGGGCCGCcCCGCGc -3'
miRNA:   3'- gGGUGuCGGCGCU-----CUCGGCGaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.