Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23818 | 5' | -52.6 | NC_005261.1 | + | 59356 | 0.65 | 0.980193 |
Target: 5'- cGUcGCcACGAGggugucgcccgCCAGCGCCCgcgccACGg -3' miRNA: 3'- -CGuUGaUGCUCaa---------GGUCGCGGGa----UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 32502 | 0.66 | 0.97323 |
Target: 5'- gGCGGCaucgGCGGGgggUCCGcgccGCGCCCgGCc -3' miRNA: 3'- -CGUUGa---UGCUCa--AGGU----CGCGGGaUGc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 20955 | 0.66 | 0.970059 |
Target: 5'- gGCuguUUACGAGgUCguggaccgcggcgCGGCGCCCUACc -3' miRNA: 3'- -CGuu-GAUGCUCaAG-------------GUCGCGGGAUGc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 115194 | 0.66 | 0.967272 |
Target: 5'- uCAGC-ACGGc--CCAGCGCCCgUGCGu -3' miRNA: 3'- cGUUGaUGCUcaaGGUCGCGGG-AUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 99482 | 0.66 | 0.970358 |
Target: 5'- gGCcGCUGCGg---CCAGCGCCgCcGCGu -3' miRNA: 3'- -CGuUGAUGCucaaGGUCGCGG-GaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 72843 | 0.66 | 0.967272 |
Target: 5'- uCGGCca-GGGcgCCAGCGCCCagGCGu -3' miRNA: 3'- cGUUGaugCUCaaGGUCGCGGGa-UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 36916 | 0.66 | 0.97323 |
Target: 5'- cGC-GCUGggcCGGGacguacUCCGGgGCCCUGCGc -3' miRNA: 3'- -CGuUGAU---GCUCa-----AGGUCgCGGGAUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 102531 | 0.66 | 0.970358 |
Target: 5'- uGCAGCUugGccgccugcGGccCCAgGCGCCCgGCGg -3' miRNA: 3'- -CGUUGAugC--------UCaaGGU-CGCGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 36814 | 0.66 | 0.975637 |
Target: 5'- gGC-GCUACGugccccgguaugcGGUgCCGGCGCCCggggGCu -3' miRNA: 3'- -CGuUGAUGC-------------UCAaGGUCGCGGGa---UGc -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 36968 | 0.66 | 0.97323 |
Target: 5'- cGCGGCgcagagcucggUGCGGGcUCCAGCcggaGCCC-GCGg -3' miRNA: 3'- -CGUUG-----------AUGCUCaAGGUCG----CGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 60097 | 0.66 | 0.970358 |
Target: 5'- aGCAGC-ACGcuggCCAGCGCgCCcGCGg -3' miRNA: 3'- -CGUUGaUGCucaaGGUCGCG-GGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 126034 | 0.66 | 0.967272 |
Target: 5'- cGCGGCcgcgcgUACGAGUgcucccgcUCCGGCGCCagcCGc -3' miRNA: 3'- -CGUUG------AUGCUCA--------AGGUCGCGGgauGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 29879 | 0.66 | 0.975894 |
Target: 5'- cGCcGCUGCcg---CCAGCGCCCgggcccGCGg -3' miRNA: 3'- -CGuUGAUGcucaaGGUCGCGGGa-----UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 97657 | 0.66 | 0.97323 |
Target: 5'- cGCAcCUG-GGGggCCGGCGUCC-GCGg -3' miRNA: 3'- -CGUuGAUgCUCaaGGUCGCGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 134981 | 0.66 | 0.975894 |
Target: 5'- gGCGAggACGGGgccgCCggGGCGCCCcugGCGc -3' miRNA: 3'- -CGUUgaUGCUCaa--GG--UCGCGGGa--UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 76420 | 0.66 | 0.97323 |
Target: 5'- gGCGcgUGCaGAGcgCCGGCGCCaugGCGg -3' miRNA: 3'- -CGUugAUG-CUCaaGGUCGCGGga-UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 11873 | 0.66 | 0.975894 |
Target: 5'- uCAGCUGCGGGgcgagcCCGcccgcacgcGCGCCCgccGCGg -3' miRNA: 3'- cGUUGAUGCUCaa----GGU---------CGCGGGa--UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 56050 | 0.66 | 0.975894 |
Target: 5'- cGCGA--GCGAuGUUCgggGGCGCCCUggGCGa -3' miRNA: 3'- -CGUUgaUGCU-CAAGg--UCGCGGGA--UGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 124076 | 0.66 | 0.97323 |
Target: 5'- cCGACUGC-AGc-CCGGCGCCC-GCGu -3' miRNA: 3'- cGUUGAUGcUCaaGGUCGCGGGaUGC- -5' |
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23818 | 5' | -52.6 | NC_005261.1 | + | 67424 | 0.66 | 0.97323 |
Target: 5'- aGCAGCgcccGCGg---CCAGCGCCCa--- -3' miRNA: 3'- -CGUUGa---UGCucaaGGUCGCGGGaugc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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