miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23818 5' -52.6 NC_005261.1 + 334 0.66 0.978359
Target:  5'- gGCGGCUGCGGcggCCcGCaGCCCggcGCGg -3'
miRNA:   3'- -CGUUGAUGCUcaaGGuCG-CGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 1411 0.67 0.952666
Target:  5'- cGCGGCggcgGCGGGgg-CGGCGCCCg--- -3'
miRNA:   3'- -CGUUGa---UGCUCaagGUCGCGGGaugc -5'
23818 5' -52.6 NC_005261.1 + 2221 0.66 0.978359
Target:  5'- aGCAGgUGCGAGagCCcgccGCGCaCCgGCGg -3'
miRNA:   3'- -CGUUgAUGCUCaaGGu---CGCG-GGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 3846 0.67 0.963966
Target:  5'- gGCGGCaGCG-GcgCCGGCGCCgcGCGg -3'
miRNA:   3'- -CGUUGaUGCuCaaGGUCGCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 3888 0.69 0.89903
Target:  5'- cGCAGCUcgGCGAGcgcggcgCgGGCGCCC-GCGc -3'
miRNA:   3'- -CGUUGA--UGCUCaa-----GgUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 4930 0.68 0.943934
Target:  5'- cGCGGCcGCGAGcgCCcGCGCC--GCGg -3'
miRNA:   3'- -CGUUGaUGCUCaaGGuCGCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 5546 0.69 0.911757
Target:  5'- cGCAGCgagACGGGg---GGCGCCCgagcgGCGg -3'
miRNA:   3'- -CGUUGa--UGCUCaaggUCGCGGGa----UGC- -5'
23818 5' -52.6 NC_005261.1 + 11873 0.66 0.975894
Target:  5'- uCAGCUGCGGGgcgagcCCGcccgcacgcGCGCCCgccGCGg -3'
miRNA:   3'- cGUUGAUGCUCaa----GGU---------CGCGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 11928 0.67 0.952666
Target:  5'- gGCGGCUGCGGcggCCcGCGCCgCgGCGg -3'
miRNA:   3'- -CGUUGAUGCUcaaGGuCGCGG-GaUGC- -5'
23818 5' -52.6 NC_005261.1 + 14976 0.67 0.963966
Target:  5'- gGCGACUGCGcGgccgcgCCGgccGCGCCCggagcGCGg -3'
miRNA:   3'- -CGUUGAUGCuCaa----GGU---CGCGGGa----UGC- -5'
23818 5' -52.6 NC_005261.1 + 19263 0.67 0.956668
Target:  5'- aCAGCgcgcGCGGGUacgCCAGCGUCUcgUACGc -3'
miRNA:   3'- cGUUGa---UGCUCAa--GGUCGCGGG--AUGC- -5'
23818 5' -52.6 NC_005261.1 + 20955 0.66 0.970059
Target:  5'- gGCuguUUACGAGgUCguggaccgcggcgCGGCGCCCUACc -3'
miRNA:   3'- -CGuu-GAUGCUCaAG-------------GUCGCGGGAUGc -5'
23818 5' -52.6 NC_005261.1 + 28289 0.67 0.952666
Target:  5'- cGCGGCcGCGGucgucuccuucGUUCgCGGCGCCC-GCGc -3'
miRNA:   3'- -CGUUGaUGCU-----------CAAG-GUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 29879 0.66 0.975894
Target:  5'- cGCcGCUGCcg---CCAGCGCCCgggcccGCGg -3'
miRNA:   3'- -CGuUGAUGcucaaGGUCGCGGGa-----UGC- -5'
23818 5' -52.6 NC_005261.1 + 31454 0.69 0.885329
Target:  5'- gGCGAggACGAGcgCCGGCGgCCUGa- -3'
miRNA:   3'- -CGUUgaUGCUCaaGGUCGCgGGAUgc -5'
23818 5' -52.6 NC_005261.1 + 32502 0.66 0.97323
Target:  5'- gGCGGCaucgGCGGGgggUCCGcgccGCGCCCgGCc -3'
miRNA:   3'- -CGUUGa---UGCUCa--AGGU----CGCGGGaUGc -5'
23818 5' -52.6 NC_005261.1 + 36814 0.66 0.975637
Target:  5'- gGC-GCUACGugccccgguaugcGGUgCCGGCGCCCggggGCu -3'
miRNA:   3'- -CGuUGAUGC-------------UCAaGGUCGCGGGa---UGc -5'
23818 5' -52.6 NC_005261.1 + 36916 0.66 0.97323
Target:  5'- cGC-GCUGggcCGGGacguacUCCGGgGCCCUGCGc -3'
miRNA:   3'- -CGuUGAU---GCUCa-----AGGUCgCGGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 36968 0.66 0.97323
Target:  5'- cGCGGCgcagagcucggUGCGGGcUCCAGCcggaGCCC-GCGg -3'
miRNA:   3'- -CGUUG-----------AUGCUCaAGGUCG----CGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 37930 0.66 0.978359
Target:  5'- cGCGAgUACGAGcgCCGgagccGCGUCgaGCGg -3'
miRNA:   3'- -CGUUgAUGCUCaaGGU-----CGCGGgaUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.