miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23818 5' -52.6 NC_005261.1 + 93905 0.78 0.46983
Target:  5'- aGCGACUGCGGGcg-CGGCGCCC-GCGg -3'
miRNA:   3'- -CGUUGAUGCUCaagGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 127385 0.77 0.479484
Target:  5'- gGCGGCgGCGAGgagcCCGGCGCCCUcGCa -3'
miRNA:   3'- -CGUUGaUGCUCaa--GGUCGCGGGA-UGc -5'
23818 5' -52.6 NC_005261.1 + 56389 0.76 0.570106
Target:  5'- aGgAGCUcGCGGGggCCcugGGCGCCCUGCGc -3'
miRNA:   3'- -CgUUGA-UGCUCaaGG---UCGCGGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 49209 0.75 0.601363
Target:  5'- aGCGAggGCGGGaggCCGGCGCCCaGCGc -3'
miRNA:   3'- -CGUUgaUGCUCaa-GGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 63010 0.74 0.664299
Target:  5'- gGCGGCcgcgcccgcGCGGGcgCCGGCGCCCgcgGCGa -3'
miRNA:   3'- -CGUUGa--------UGCUCaaGGUCGCGGGa--UGC- -5'
23818 5' -52.6 NC_005261.1 + 77922 0.73 0.736311
Target:  5'- cCAGCUGCGGG--CCGGCuacCCCUACGg -3'
miRNA:   3'- cGUUGAUGCUCaaGGUCGc--GGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 103125 0.72 0.756176
Target:  5'- cCAGCgcgccCGGGUucUCCAGCGCCUcGCGg -3'
miRNA:   3'- cGUUGau---GCUCA--AGGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 59246 0.72 0.785083
Target:  5'- aGCGAgaGCGGGcgCCGGCGCCacGCGu -3'
miRNA:   3'- -CGUUgaUGCUCaaGGUCGCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 131016 0.71 0.830246
Target:  5'- cGCuuCUACGuGUUCCAG-GCCgaGCGc -3'
miRNA:   3'- -CGuuGAUGCuCAAGGUCgCGGgaUGC- -5'
23818 5' -52.6 NC_005261.1 + 76653 0.71 0.838744
Target:  5'- aGCGcCUGCGAGgu-CGGCGCCgUGCu -3'
miRNA:   3'- -CGUuGAUGCUCaagGUCGCGGgAUGc -5'
23818 5' -52.6 NC_005261.1 + 69037 0.71 0.838744
Target:  5'- -gGACUACGGGUUcagcuucugCCAGCGCUUcGCGc -3'
miRNA:   3'- cgUUGAUGCUCAA---------GGUCGCGGGaUGC- -5'
23818 5' -52.6 NC_005261.1 + 133263 0.7 0.847044
Target:  5'- gGCGGCgcGCGAGUaccagggcgCCGGCGCCCgccuCGu -3'
miRNA:   3'- -CGUUGa-UGCUCAa--------GGUCGCGGGau--GC- -5'
23818 5' -52.6 NC_005261.1 + 103670 0.7 0.878122
Target:  5'- aGCGACgcccGCGAGgcCgAGCGCCCguuuauaGCGg -3'
miRNA:   3'- -CGUUGa---UGCUCaaGgUCGCGGGa------UGC- -5'
23818 5' -52.6 NC_005261.1 + 99354 0.7 0.878122
Target:  5'- aGCAGCgcgcacgugACGAGgUCCAGCGCguugaccgUCUGCa -3'
miRNA:   3'- -CGUUGa--------UGCUCaAGGUCGCG--------GGAUGc -5'
23818 5' -52.6 NC_005261.1 + 31454 0.69 0.885329
Target:  5'- gGCGAggACGAGcgCCGGCGgCCUGa- -3'
miRNA:   3'- -CGUUgaUGCUCaaGGUCGCgGGAUgc -5'
23818 5' -52.6 NC_005261.1 + 123271 0.69 0.885329
Target:  5'- cGUGACgaggUGCGGGUgguccgCCAGCGCCUccGCGa -3'
miRNA:   3'- -CGUUG----AUGCUCAa-----GGUCGCGGGa-UGC- -5'
23818 5' -52.6 NC_005261.1 + 95866 0.69 0.8923
Target:  5'- cGCGauACUGCGccuuGUUUgGGCGCCCUcuuaACGc -3'
miRNA:   3'- -CGU--UGAUGCu---CAAGgUCGCGGGA----UGC- -5'
23818 5' -52.6 NC_005261.1 + 134230 0.69 0.8923
Target:  5'- gGCAGCgucgGCGuGgcgCAcGCGCCCUGCGc -3'
miRNA:   3'- -CGUUGa---UGCuCaagGU-CGCGGGAUGC- -5'
23818 5' -52.6 NC_005261.1 + 123344 0.69 0.89903
Target:  5'- aGCGGCUcGCGGccgaCCAGCGCCuCUAUGc -3'
miRNA:   3'- -CGUUGA-UGCUcaa-GGUCGCGG-GAUGC- -5'
23818 5' -52.6 NC_005261.1 + 71074 0.69 0.89903
Target:  5'- cGCGGCggGCGGGgcgUCCGG-GCCCgagaagGCGu -3'
miRNA:   3'- -CGUUGa-UGCUCa--AGGUCgCGGGa-----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.