miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 114328 0.66 0.965754
Target:  5'- cGGCGCaagGUGGACUGGCuCGagcgGCGCGu -3'
miRNA:   3'- aCCGUGa--CGUCUGGCUGuGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 46725 0.75 0.564163
Target:  5'- cGGC-CUcGUAcGCCGGCGCGUGCACGu -3'
miRNA:   3'- aCCGuGA-CGUcUGGCUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 109211 0.75 0.564163
Target:  5'- aGGCGCUcGUAGGCgCGGCACGccGCGCGc -3'
miRNA:   3'- aCCGUGA-CGUCUG-GCUGUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 76460 0.75 0.574543
Target:  5'- cGGCGacgGCGGcGCCGGCGCGcGCGCGg -3'
miRNA:   3'- aCCGUga-CGUC-UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 102203 0.74 0.595424
Target:  5'- gGGCGCgUGCGGGuuGAaCGCAaGCACGg -3'
miRNA:   3'- aCCGUG-ACGUCUggCU-GUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118922 0.74 0.595424
Target:  5'- cGGCGCcGCGGGCgCGGCGCc-GCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUG-GCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 100784 0.74 0.610113
Target:  5'- aGGCGCguccGCAGGCCagcaggucccggaagGGCGCGUGCGCc -3'
miRNA:   3'- aCCGUGa---CGUCUGG---------------CUGUGUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 105352 0.74 0.61642
Target:  5'- cGGC-CgugagGCAGGCCGugACAggcgGCGCGc -3'
miRNA:   3'- aCCGuGa----CGUCUGGCugUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 63337 0.73 0.637465
Target:  5'- gUGGCGCUGCgAGGCCcACGgGUuCACGg -3'
miRNA:   3'- -ACCGUGACG-UCUGGcUGUgUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 58418 0.75 0.561059
Target:  5'- gGuGCACUGCAGccGCCGcgagaagcccacgcACGCGUACGCGu -3'
miRNA:   3'- aC-CGUGACGUC--UGGC--------------UGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 39897 0.75 0.553834
Target:  5'- cGGCugUGCAG-CUGGCGC--GCGCGg -3'
miRNA:   3'- aCCGugACGUCuGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 61034 0.75 0.523212
Target:  5'- cGGCACcGCGGcaGCUGGCugGUGCugGg -3'
miRNA:   3'- aCCGUGaCGUC--UGGCUGugUAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 70381 0.78 0.37414
Target:  5'- cGGCGCcGCuGGCCGACAC--GCACGa -3'
miRNA:   3'- aCCGUGaCGuCUGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75222 0.78 0.382595
Target:  5'- cGGCGCUGCAGuccaGCgGGCGCAUGUACGu -3'
miRNA:   3'- aCCGUGACGUC----UGgCUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 95046 0.78 0.417659
Target:  5'- cGGCGCcGCAGACCGcccuccGC-CAUGCACGc -3'
miRNA:   3'- aCCGUGaCGUCUGGC------UGuGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 121821 0.76 0.473739
Target:  5'- gGGCuCUGCGGGCCGcCGCGgcgGCGCa -3'
miRNA:   3'- aCCGuGACGUCUGGCuGUGUa--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 13445 0.76 0.492277
Target:  5'- gGGUGCagGCAGGCCGGCGCcucgggguggaagAUGCACGu -3'
miRNA:   3'- aCCGUGa-CGUCUGGCUGUG-------------UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 131755 0.76 0.493263
Target:  5'- cGGCAC-GCcGGCCGGCGCGgcggGCGCGc -3'
miRNA:   3'- aCCGUGaCGuCUGGCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 47042 0.76 0.510143
Target:  5'- cGGCGCUGUccagaaagucccacGGGCCGAgcgcgugguaCGCGUGCACGc -3'
miRNA:   3'- aCCGUGACG--------------UCUGGCU----------GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 133622 0.76 0.513147
Target:  5'- cUGGCGCUGUGGGCCGcgcucgccGCGCcgcUGCGCGa -3'
miRNA:   3'- -ACCGUGACGUCUGGC--------UGUGu--AUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.