miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 1712 0.66 0.962334
Target:  5'- cGGUACUcgcgcgGCGGcACgGGCACcgcgGUGCGCGg -3'
miRNA:   3'- aCCGUGA------CGUC-UGgCUGUG----UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3401 0.66 0.950248
Target:  5'- cGGCACUuccgccgGCGGGCUGAagaGC--GCGCGg -3'
miRNA:   3'- aCCGUGA-------CGUCUGGCUg--UGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3449 0.73 0.67943
Target:  5'- gGGCGC-GCGGGCCGcCGCGccGCGCGu -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3544 0.68 0.888841
Target:  5'- cGGCGCgcagcgcgGCGGGCgCGGCGCcgcuaagGCGCGc -3'
miRNA:   3'- aCCGUGa-------CGUCUG-GCUGUGua-----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3860 0.72 0.740943
Target:  5'- cGGCGCcGCGcGGCCGGCGa--GCACGg -3'
miRNA:   3'- aCCGUGaCGU-CUGGCUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3925 0.73 0.67943
Target:  5'- cGGCGCcggccuccggGUAGGCCaugGGCGCGUACGCGc -3'
miRNA:   3'- aCCGUGa---------CGUCUGG---CUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 4016 0.72 0.730884
Target:  5'- aUGGcCAC-GCAGGCCGcCACGUGCGg- -3'
miRNA:   3'- -ACC-GUGaCGUCUGGCuGUGUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 5123 0.73 0.658492
Target:  5'- cGGCGCggGCGGcccGCCGGCGCucGCGCGc -3'
miRNA:   3'- aCCGUGa-CGUC---UGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 10265 0.66 0.9548
Target:  5'- cUGGCGCcuucUGCccugaGGACUGGCGCcccgACGCGc -3'
miRNA:   3'- -ACCGUG----ACG-----UCUGGCUGUGua--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 10350 0.67 0.926333
Target:  5'- cGGCucgGCGuuugucacGGCCGACACGcGCGCGc -3'
miRNA:   3'- aCCGugaCGU--------CUGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 10425 0.69 0.881736
Target:  5'- gGGUGCUGUgcccACgGACGCGUGCugGg -3'
miRNA:   3'- aCCGUGACGuc--UGgCUGUGUAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 12328 0.67 0.931704
Target:  5'- gGGCGCgcGCuuGGCCGGCGCGgcCGCc -3'
miRNA:   3'- aCCGUGa-CGu-CUGGCUGUGUauGUGc -5'
23819 3' -53.3 NC_005261.1 + 12641 0.7 0.807989
Target:  5'- cGGCGCgGUcugGGGCCG-CGCcgGCGCGa -3'
miRNA:   3'- aCCGUGaCG---UCUGGCuGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 13295 0.68 0.90808
Target:  5'- gGGCGCaGguGugCGACGggggccuCGUACGCa -3'
miRNA:   3'- aCCGUGaCguCugGCUGU-------GUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 13445 0.76 0.492277
Target:  5'- gGGUGCagGCAGGCCGGCGCcucgggguggaagAUGCACGu -3'
miRNA:   3'- aCCGUGa-CGUCUGGCUGUG-------------UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 14847 0.67 0.936822
Target:  5'- cGGCA--GCAGGCggCGGCGCAUcGCGCa -3'
miRNA:   3'- aCCGUgaCGUCUG--GCUGUGUA-UGUGc -5'
23819 3' -53.3 NC_005261.1 + 14975 0.66 0.962334
Target:  5'- gGGCgACUGCGcGGCCG-CGCcgGcCGCGc -3'
miRNA:   3'- aCCG-UGACGU-CUGGCuGUGuaU-GUGC- -5'
23819 3' -53.3 NC_005261.1 + 15746 0.67 0.941688
Target:  5'- -cGCGC-GCAGGCCGACcgccucgccGCgAUACACa -3'
miRNA:   3'- acCGUGaCGUCUGGCUG---------UG-UAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 16075 0.66 0.946305
Target:  5'- cGGCGCgUGUAGACgaaguacgcggCGGCACcgGCGgCGg -3'
miRNA:   3'- aCCGUG-ACGUCUG-----------GCUGUGuaUGU-GC- -5'
23819 3' -53.3 NC_005261.1 + 17462 0.7 0.834387
Target:  5'- gGGgaaACUGCGGGCaGACGCGgGCGCGc -3'
miRNA:   3'- aCCg--UGACGUCUGgCUGUGUaUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.