miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 137036 0.66 0.954398
Target:  5'- cGGCGuCgguggaggGCGGACCGucggcagGCGCGgagGCGCGg -3'
miRNA:   3'- aCCGU-Ga-------CGUCUGGC-------UGUGUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 136792 0.69 0.881736
Target:  5'- aGGCGgUGCAGGCCaGugGCGgGCuCGu -3'
miRNA:   3'- aCCGUgACGUCUGG-CugUGUaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 136601 0.7 0.825771
Target:  5'- cGGCGCaGCguGGAgCGGCGCGcGCGCGc -3'
miRNA:   3'- aCCGUGaCG--UCUgGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 136572 0.7 0.798841
Target:  5'- aGGCGCggGUGGGCgGGCGCAgagACGCc -3'
miRNA:   3'- aCCGUGa-CGUCUGgCUGUGUa--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 135459 0.69 0.842808
Target:  5'- gGGCGCUGCgGGACCucgUAC-UGCGCGg -3'
miRNA:   3'- aCCGUGACG-UCUGGcu-GUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 135278 0.66 0.958685
Target:  5'- nGGcCugUGCAGAaCGGCGgGUuccGCGCGa -3'
miRNA:   3'- aCC-GugACGUCUgGCUGUgUA---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 135256 0.69 0.881736
Target:  5'- gGGCGC-GCGGAUgGACAuCAUGCGg- -3'
miRNA:   3'- aCCGUGaCGUCUGgCUGU-GUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 135035 0.66 0.958685
Target:  5'- nGGCg--GCgAGGCCGACGCcUGCGgCGg -3'
miRNA:   3'- aCCGugaCG-UCUGGCUGUGuAUGU-GC- -5'
23819 3' -53.3 NC_005261.1 + 135008 0.72 0.730884
Target:  5'- cUGGCGCgGCGGGCCcGCACGcggcCGCGg -3'
miRNA:   3'- -ACCGUGaCGUCUGGcUGUGUau--GUGC- -5'
23819 3' -53.3 NC_005261.1 + 134770 0.66 0.958685
Target:  5'- cGGCAUgGCGGACC-ACGagaGCGCGa -3'
miRNA:   3'- aCCGUGaCGUCUGGcUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 133826 0.73 0.637465
Target:  5'- aGGCGCUGCGcGGCC---GCGUGCGCGc -3'
miRNA:   3'- aCCGUGACGU-CUGGcugUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 133622 0.76 0.513147
Target:  5'- cUGGCGCUGUGGGCCGcgcucgccGCGCcgcUGCGCGa -3'
miRNA:   3'- -ACCGUGACGUCUGGC--------UGUGu--AUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 133317 0.69 0.874397
Target:  5'- cUGGCuGCUcgcGCAGcuccuGCCGGCACGcGCGCGc -3'
miRNA:   3'- -ACCG-UGA---CGUC-----UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 132387 0.71 0.750902
Target:  5'- cGGCGCUGUuccccgAGGCCGcCGCcgACGCc -3'
miRNA:   3'- aCCGUGACG------UCUGGCuGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 131755 0.76 0.493263
Target:  5'- cGGCAC-GCcGGCCGGCGCGgcggGCGCGc -3'
miRNA:   3'- aCCGUGaCGuCUGGCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 130356 0.69 0.851026
Target:  5'- -cGCGCUGCGGguccucuacgccACCGACGgcUGCGCGa -3'
miRNA:   3'- acCGUGACGUC------------UGGCUGUguAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 128821 0.73 0.658492
Target:  5'- -cGCGCUGCGG-CUGACGCucGCGCGg -3'
miRNA:   3'- acCGUGACGUCuGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 127804 0.67 0.926333
Target:  5'- cGGCGCcgcggcgGCGGGCCGcucGCGCu--CGCGg -3'
miRNA:   3'- aCCGUGa------CGUCUGGC---UGUGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 126699 0.69 0.874397
Target:  5'- cGGCGgUGCGGgaagcgGCUGGuuCGCGUGCGCGu -3'
miRNA:   3'- aCCGUgACGUC------UGGCU--GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 124073 0.71 0.770479
Target:  5'- cGGCcgACUGCAGcCCGGCGCc--CGCGu -3'
miRNA:   3'- aCCG--UGACGUCuGGCUGUGuauGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.