miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 62832 0.66 0.946305
Target:  5'- gGGCACcgGCgggGGACUGGCGCGcccCGCGc -3'
miRNA:   3'- aCCGUGa-CG---UCUGGCUGUGUau-GUGC- -5'
23819 3' -53.3 NC_005261.1 + 45630 0.66 0.954398
Target:  5'- cGGCGCgGCGGGCCcGCGCcggagcaGUGCccaGCGg -3'
miRNA:   3'- aCCGUGaCGUCUGGcUGUG-------UAUG---UGC- -5'
23819 3' -53.3 NC_005261.1 + 10265 0.66 0.9548
Target:  5'- cUGGCGCcuucUGCccugaGGACUGGCGCcccgACGCGc -3'
miRNA:   3'- -ACCGUG----ACG-----UCUGGCUGUGua--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 88767 0.66 0.954398
Target:  5'- cGGCGCUGCgcuccucggcccuGGccGCCGGCGCc-GCGCa -3'
miRNA:   3'- aCCGUGACG-------------UC--UGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 3401 0.66 0.950248
Target:  5'- cGGCACUuccgccgGCGGGCUGAagaGC--GCGCGg -3'
miRNA:   3'- aCCGUGA-------CGUCUGGCUg--UGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 76868 0.66 0.950674
Target:  5'- cUGGCGCccgGCgaggAGGCCGACG---GCACGc -3'
miRNA:   3'- -ACCGUGa--CG----UCUGGCUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 34212 0.66 0.946305
Target:  5'- cGGCGC-GuCGGACgCgGACGCAgACGCGg -3'
miRNA:   3'- aCCGUGaC-GUCUG-G-CUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 108895 0.66 0.950674
Target:  5'- -cGCGCUGCccGCCGGCgaGCGggGCGCGg -3'
miRNA:   3'- acCGUGACGucUGGCUG--UGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 37208 0.66 0.946305
Target:  5'- cGGCGCUacuguggcucccGCGGGCUuGCGCGgcgcgGCGCGu -3'
miRNA:   3'- aCCGUGA------------CGUCUGGcUGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 112125 0.66 0.950674
Target:  5'- cGGCGCUGU--ACCGGCAgcuaguCGUGCccGCGa -3'
miRNA:   3'- aCCGUGACGucUGGCUGU------GUAUG--UGC- -5'
23819 3' -53.3 NC_005261.1 + 118679 0.66 0.946305
Target:  5'- gGGCg--GCGGgcGCUGGCGCAcGCGCGg -3'
miRNA:   3'- aCCGugaCGUC--UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 105573 0.66 0.950674
Target:  5'- aGGUAC-GCguagaGGGCCucggGGCGCGUGCGCGc -3'
miRNA:   3'- aCCGUGaCG-----UCUGG----CUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 64958 0.66 0.950248
Target:  5'- cGGCACUGUguacucguccacgAGccGCCGcaGCGCGUGCAgGu -3'
miRNA:   3'- aCCGUGACG-------------UC--UGGC--UGUGUAUGUgC- -5'
23819 3' -53.3 NC_005261.1 + 75409 0.66 0.950674
Target:  5'- gGGCGCgGC---CCGGCGCGUGCAg- -3'
miRNA:   3'- aCCGUGaCGucuGGCUGUGUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 137036 0.66 0.954398
Target:  5'- cGGCGuCgguggaggGCGGACCGucggcagGCGCGgagGCGCGg -3'
miRNA:   3'- aCCGU-Ga-------CGUCUGGC-------UGUGUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 114328 0.66 0.965754
Target:  5'- cGGCGCaagGUGGACUGGCuCGagcgGCGCGu -3'
miRNA:   3'- aCCGUGa--CGUCUGGCUGuGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 16075 0.66 0.946305
Target:  5'- cGGCGCgUGUAGACgaaguacgcggCGGCACcgGCGgCGg -3'
miRNA:   3'- aCCGUG-ACGUCUG-----------GCUGUGuaUGU-GC- -5'
23819 3' -53.3 NC_005261.1 + 84698 0.66 0.950674
Target:  5'- cGGCGC-GCGGGCaCGcgaGCACAaagcgGCGCGu -3'
miRNA:   3'- aCCGUGaCGUCUG-GC---UGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 93683 0.66 0.950674
Target:  5'- cGGCGCcgGCGGggcGCCGGCGgGUGC-Cu -3'
miRNA:   3'- aCCGUGa-CGUC---UGGCUGUgUAUGuGc -5'
23819 3' -53.3 NC_005261.1 + 42047 0.66 0.945854
Target:  5'- cGGUACUGCGccgaaucGugCGcCGCAUugAUGa -3'
miRNA:   3'- aCCGUGACGU-------CugGCuGUGUAugUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.