Results 1 - 20 of 187 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 70381 | 0.78 | 0.37414 |
Target: 5'- cGGCGCcGCuGGCCGACAC--GCACGa -3' miRNA: 3'- aCCGUGaCGuCUGGCUGUGuaUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 75222 | 0.78 | 0.382595 |
Target: 5'- cGGCGCUGCAGuccaGCgGGCGCAUGUACGu -3' miRNA: 3'- aCCGUGACGUC----UGgCUGUGUAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 95046 | 0.78 | 0.417659 |
Target: 5'- cGGCGCcGCAGACCGcccuccGC-CAUGCACGc -3' miRNA: 3'- aCCGUGaCGUCUGGC------UGuGUAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 112447 | 0.78 | 0.373302 |
Target: 5'- cUGGCACUGCgacgugcGGGCCGugcuaaACAUGCGCGg -3' miRNA: 3'- -ACCGUGACG-------UCUGGCug----UGUAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 121821 | 0.76 | 0.473739 |
Target: 5'- gGGCuCUGCGGGCCGcCGCGgcgGCGCa -3' miRNA: 3'- aCCGuGACGUCUGGCuGUGUa--UGUGc -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 13445 | 0.76 | 0.492277 |
Target: 5'- gGGUGCagGCAGGCCGGCGCcucgggguggaagAUGCACGu -3' miRNA: 3'- aCCGUGa-CGUCUGGCUGUG-------------UAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 131755 | 0.76 | 0.493263 |
Target: 5'- cGGCAC-GCcGGCCGGCGCGgcggGCGCGc -3' miRNA: 3'- aCCGUGaCGuCUGGCUGUGUa---UGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 47042 | 0.76 | 0.510143 |
Target: 5'- cGGCGCUGUccagaaagucccacGGGCCGAgcgcgugguaCGCGUGCACGc -3' miRNA: 3'- aCCGUGACG--------------UCUGGCU----------GUGUAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 133622 | 0.76 | 0.513147 |
Target: 5'- cUGGCGCUGUGGGCCGcgcucgccGCGCcgcUGCGCGa -3' miRNA: 3'- -ACCGUGACGUCUGGC--------UGUGu--AUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 39897 | 0.75 | 0.553834 |
Target: 5'- cGGCugUGCAG-CUGGCGC--GCGCGg -3' miRNA: 3'- aCCGugACGUCuGGCUGUGuaUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 76460 | 0.75 | 0.574543 |
Target: 5'- cGGCGacgGCGGcGCCGGCGCGcGCGCGg -3' miRNA: 3'- aCCGUga-CGUC-UGGCUGUGUaUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 109211 | 0.75 | 0.564163 |
Target: 5'- aGGCGCUcGUAGGCgCGGCACGccGCGCGc -3' miRNA: 3'- aCCGUGA-CGUCUG-GCUGUGUa-UGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 46725 | 0.75 | 0.564163 |
Target: 5'- cGGC-CUcGUAcGCCGGCGCGUGCACGu -3' miRNA: 3'- aCCGuGA-CGUcUGGCUGUGUAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 58418 | 0.75 | 0.561059 |
Target: 5'- gGuGCACUGCAGccGCCGcgagaagcccacgcACGCGUACGCGu -3' miRNA: 3'- aC-CGUGACGUC--UGGC--------------UGUGUAUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 61034 | 0.75 | 0.523212 |
Target: 5'- cGGCACcGCGGcaGCUGGCugGUGCugGg -3' miRNA: 3'- aCCGUGaCGUC--UGGCUGugUAUGugC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 102203 | 0.74 | 0.595424 |
Target: 5'- gGGCGCgUGCGGGuuGAaCGCAaGCACGg -3' miRNA: 3'- aCCGUG-ACGUCUggCU-GUGUaUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 118922 | 0.74 | 0.595424 |
Target: 5'- cGGCGCcGCGGGCgCGGCGCc-GCGCGg -3' miRNA: 3'- aCCGUGaCGUCUG-GCUGUGuaUGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 100784 | 0.74 | 0.610113 |
Target: 5'- aGGCGCguccGCAGGCCagcaggucccggaagGGCGCGUGCGCc -3' miRNA: 3'- aCCGUGa---CGUCUGG---------------CUGUGUAUGUGc -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 105352 | 0.74 | 0.61642 |
Target: 5'- cGGC-CgugagGCAGGCCGugACAggcgGCGCGc -3' miRNA: 3'- aCCGuGa----CGUCUGGCugUGUa---UGUGC- -5' |
|||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 63337 | 0.73 | 0.637465 |
Target: 5'- gUGGCGCUGCgAGGCCcACGgGUuCACGg -3' miRNA: 3'- -ACCGUGACG-UCUGGcUGUgUAuGUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home