miRNA display CGI


Results 21 - 40 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 19149 0.66 0.965754
Target:  5'- cGGCGCgcacgGCcaGCCGGCGgAUcACGCGa -3'
miRNA:   3'- aCCGUGa----CGucUGGCUGUgUA-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 22816 0.68 0.908706
Target:  5'- cGGCGCUGCc-GCCGcCGcCGUugGCGc -3'
miRNA:   3'- aCCGUGACGucUGGCuGU-GUAugUGC- -5'
23819 3' -53.3 NC_005261.1 + 24925 0.7 0.834387
Target:  5'- cGGCgGCUGCAGccGCCGAgggGCAggcugGCACGg -3'
miRNA:   3'- aCCG-UGACGUC--UGGCUg--UGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 27359 0.67 0.926333
Target:  5'- cGGCGC--CGGACCGGCGCGagGC-CGg -3'
miRNA:   3'- aCCGUGacGUCUGGCUGUGUa-UGuGC- -5'
23819 3' -53.3 NC_005261.1 + 28271 0.67 0.936822
Target:  5'- gGGCGCUGUugccGCCGcCGCGgcCGCGg -3'
miRNA:   3'- aCCGUGACGuc--UGGCuGUGUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 29566 0.69 0.866827
Target:  5'- cUGGCgcgccuGCUGCAG--CGGCGCGUGCAgGg -3'
miRNA:   3'- -ACCG------UGACGUCugGCUGUGUAUGUgC- -5'
23819 3' -53.3 NC_005261.1 + 29788 0.66 0.965754
Target:  5'- aUGGC-CUacccGgAGGCCGGCGCcggcgGCGCGg -3'
miRNA:   3'- -ACCGuGA----CgUCUGGCUGUGua---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 29962 0.69 0.842808
Target:  5'- aGGCGCUagaggcggcGCGGugCGcCGCcgGCGCGu -3'
miRNA:   3'- aCCGUGA---------CGUCugGCuGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 30358 0.69 0.866827
Target:  5'- cGGCcCUGaAGGCCGGCGCGccggGCGCc -3'
miRNA:   3'- aCCGuGACgUCUGGCUGUGUa---UGUGc -5'
23819 3' -53.3 NC_005261.1 + 32179 0.7 0.807989
Target:  5'- cUGGC-CUGCGGG-CGGCGCGcGCugGa -3'
miRNA:   3'- -ACCGuGACGUCUgGCUGUGUaUGugC- -5'
23819 3' -53.3 NC_005261.1 + 32236 0.66 0.965754
Target:  5'- gUGGCcuuCUGCGcGGCCG-CGC-UGCugGa -3'
miRNA:   3'- -ACCGu--GACGU-CUGGCuGUGuAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 32441 0.67 0.936822
Target:  5'- cGGC-CUGgGcGCCGGCACAgucacccccggGCACGg -3'
miRNA:   3'- aCCGuGACgUcUGGCUGUGUa----------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 33078 0.67 0.931704
Target:  5'- cGGCGCUgGCGGccGCCGcCACAUccccugcgucggGCACu -3'
miRNA:   3'- aCCGUGA-CGUC--UGGCuGUGUA------------UGUGc -5'
23819 3' -53.3 NC_005261.1 + 33369 0.69 0.859035
Target:  5'- gGGCcgcgccggGCUGCGGGCCGcCGCAgcCGCc -3'
miRNA:   3'- aCCG--------UGACGUCUGGCuGUGUauGUGc -5'
23819 3' -53.3 NC_005261.1 + 34212 0.66 0.946305
Target:  5'- cGGCGC-GuCGGACgCgGACGCAgACGCGg -3'
miRNA:   3'- aCCGUGaC-GUCUG-G-CUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 34366 0.69 0.859035
Target:  5'- gGGCGCcgcGCGGcGCCGcGCGCAgACGCGg -3'
miRNA:   3'- aCCGUGa--CGUC-UGGC-UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 36762 0.67 0.941688
Target:  5'- cUGGCGCcccUGCAcGCCGGCcCGUGCGu- -3'
miRNA:   3'- -ACCGUG---ACGUcUGGCUGuGUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 37184 0.69 0.842808
Target:  5'- gGGCGCUGCuGG-CGGCGC-UGCugGc -3'
miRNA:   3'- aCCGUGACGuCUgGCUGUGuAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 37208 0.66 0.946305
Target:  5'- cGGCGCUacuguggcucccGCGGGCUuGCGCGgcgcgGCGCGu -3'
miRNA:   3'- aCCGUGA------------CGUCUGGcUGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 37382 0.69 0.881736
Target:  5'- cGGCGCUGUGGuacGCgGACACcaaaagggcGUACugGg -3'
miRNA:   3'- aCCGUGACGUC---UGgCUGUG---------UAUGugC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.