miRNA display CGI


Results 41 - 60 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 39800 0.69 0.842808
Target:  5'- cGGCGCgGCc-GCCGGCGCcaggcucuggccGUACACGg -3'
miRNA:   3'- aCCGUGaCGucUGGCUGUG------------UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 39897 0.75 0.553834
Target:  5'- cGGCugUGCAG-CUGGCGC--GCGCGg -3'
miRNA:   3'- aCCGugACGUCuGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 40400 0.67 0.941688
Target:  5'- aGGacaCGCUGCGcGACagGGcCACGUACACGg -3'
miRNA:   3'- aCC---GUGACGU-CUGg-CU-GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 42047 0.66 0.945854
Target:  5'- cGGUACUGCGccgaaucGugCGcCGCAUugAUGa -3'
miRNA:   3'- aCCGUGACGU-------CugGCuGUGUAugUGC- -5'
23819 3' -53.3 NC_005261.1 + 43149 0.68 0.908706
Target:  5'- cGGC-CUGCGcgccGCCGACAUcgcgGCGCGa -3'
miRNA:   3'- aCCGuGACGUc---UGGCUGUGua--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44021 0.67 0.931704
Target:  5'- cGGCGCgGCGGGCgGcCGCc-GCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUGgCuGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44321 0.69 0.851026
Target:  5'- gGGCGCcGCAGACggggGGCugGgGCACGa -3'
miRNA:   3'- aCCGUGaCGUCUGg---CUGugUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44731 0.67 0.936822
Target:  5'- gGGCGCUGCAGcugggccCCGA-GC-UGCGCGc -3'
miRNA:   3'- aCCGUGACGUCu------GGCUgUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44882 0.71 0.750902
Target:  5'- cGaGCGCcGCGGggaugGCCGGgGCGUACACGg -3'
miRNA:   3'- aC-CGUGaCGUC-----UGGCUgUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 45630 0.66 0.954398
Target:  5'- cGGCGCgGCGGGCCcGCGCcggagcaGUGCccaGCGg -3'
miRNA:   3'- aCCGUGaCGUCUGGcUGUG-------UAUG---UGC- -5'
23819 3' -53.3 NC_005261.1 + 46072 0.69 0.851026
Target:  5'- gGGCGCcGCcucguGGCCgGACACGaGCACGu -3'
miRNA:   3'- aCCGUGaCGu----CUGG-CUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 46159 0.69 0.859035
Target:  5'- cGGCACUGCGccccagucgccGAUgGGCGCAgucGCGCu -3'
miRNA:   3'- aCCGUGACGU-----------CUGgCUGUGUa--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 46725 0.75 0.564163
Target:  5'- cGGC-CUcGUAcGCCGGCGCGUGCACGu -3'
miRNA:   3'- aCCGuGA-CGUcUGGCUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 47042 0.76 0.510143
Target:  5'- cGGCGCUGUccagaaagucccacGGGCCGAgcgcgugguaCGCGUGCACGc -3'
miRNA:   3'- aCCGUGACG--------------UCUGGCU----------GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 47663 0.66 0.946305
Target:  5'- cGGCcaGCcGCAGcGCCGAgCGCA-GCACGg -3'
miRNA:   3'- aCCG--UGaCGUC-UGGCU-GUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 48024 0.68 0.90233
Target:  5'- cGGCAgaGCAGGgCGaggaGCACGcGCGCGc -3'
miRNA:   3'- aCCGUgaCGUCUgGC----UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 48106 0.67 0.92071
Target:  5'- cGGUGCUGUacgAGACgGGCAUGgcgcGCGCGg -3'
miRNA:   3'- aCCGUGACG---UCUGgCUGUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 48195 0.66 0.958685
Target:  5'- gGGCAaacagggcGCGGGCCGGCGCGcguuucagaGCGCGc -3'
miRNA:   3'- aCCGUga------CGUCUGGCUGUGUa--------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 48445 0.67 0.92071
Target:  5'- cGGUGCgugGCGcGGCCGGCGCGgucaACGCc -3'
miRNA:   3'- aCCGUGa--CGU-CUGGCUGUGUa---UGUGc -5'
23819 3' -53.3 NC_005261.1 + 49081 0.66 0.958685
Target:  5'- gGGCACgcgccGCGGGCCcGCugAgcGCGCGc -3'
miRNA:   3'- aCCGUGa----CGUCUGGcUGugUa-UGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.