miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 61034 0.75 0.523212
Target:  5'- cGGCACcGCGGcaGCUGGCugGUGCugGg -3'
miRNA:   3'- aCCGUGaCGUC--UGGCUGugUAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 39897 0.75 0.553834
Target:  5'- cGGCugUGCAG-CUGGCGC--GCGCGg -3'
miRNA:   3'- aCCGugACGUCuGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 58418 0.75 0.561059
Target:  5'- gGuGCACUGCAGccGCCGcgagaagcccacgcACGCGUACGCGu -3'
miRNA:   3'- aC-CGUGACGUC--UGGC--------------UGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 46725 0.75 0.564163
Target:  5'- cGGC-CUcGUAcGCCGGCGCGUGCACGu -3'
miRNA:   3'- aCCGuGA-CGUcUGGCUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 109211 0.75 0.564163
Target:  5'- aGGCGCUcGUAGGCgCGGCACGccGCGCGc -3'
miRNA:   3'- aCCGUGA-CGUCUG-GCUGUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 76460 0.75 0.574543
Target:  5'- cGGCGacgGCGGcGCCGGCGCGcGCGCGg -3'
miRNA:   3'- aCCGUga-CGUC-UGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 112447 0.78 0.373302
Target:  5'- cUGGCACUGCgacgugcGGGCCGugcuaaACAUGCGCGg -3'
miRNA:   3'- -ACCGUGACG-------UCUGGCug----UGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118922 0.74 0.595424
Target:  5'- cGGCGCcGCGGGCgCGGCGCc-GCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUG-GCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 100784 0.74 0.610113
Target:  5'- aGGCGCguccGCAGGCCagcaggucccggaagGGCGCGUGCGCc -3'
miRNA:   3'- aCCGUGa---CGUCUGG---------------CUGUGUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 105352 0.74 0.61642
Target:  5'- cGGC-CgugagGCAGGCCGugACAggcgGCGCGc -3'
miRNA:   3'- aCCGuGa----CGUCUGGCugUGUa---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 63337 0.73 0.637465
Target:  5'- gUGGCGCUGCgAGGCCcACGgGUuCACGg -3'
miRNA:   3'- -ACCGUGACG-UCUGGcUGUgUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 133826 0.73 0.637465
Target:  5'- aGGCGCUGCGcGGCC---GCGUGCGCGc -3'
miRNA:   3'- aCCGUGACGU-CUGGcugUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 5123 0.73 0.658492
Target:  5'- cGGCGCggGCGGcccGCCGGCGCucGCGCGc -3'
miRNA:   3'- aCCGUGa-CGUC---UGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118495 0.73 0.658492
Target:  5'- cGGCGCUGCGGACCcuGGCGCc-GCuCGg -3'
miRNA:   3'- aCCGUGACGUCUGG--CUGUGuaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 128821 0.73 0.658492
Target:  5'- -cGCGCUGCGG-CUGACGCucGCGCGg -3'
miRNA:   3'- acCGUGACGUCuGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 80083 0.73 0.668977
Target:  5'- gGGgAC-GCGGACCGGCGCGcGCGCc -3'
miRNA:   3'- aCCgUGaCGUCUGGCUGUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 3925 0.73 0.67943
Target:  5'- cGGCGCcggccuccggGUAGGCCaugGGCGCGUACGCGc -3'
miRNA:   3'- aCCGUGa---------CGUCUGG---CUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 90447 0.73 0.67943
Target:  5'- cGcGCGCUGCAcuuuGugCGcgcGCACGUGCGCGa -3'
miRNA:   3'- aC-CGUGACGU----CugGC---UGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3449 0.73 0.67943
Target:  5'- gGGCGC-GCGGGCCGcCGCGccGCGCGu -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 53115 0.73 0.67943
Target:  5'- cGGCGCUGCGcGCCGccaacaggGCGgCGUACGCGc -3'
miRNA:   3'- aCCGUGACGUcUGGC--------UGU-GUAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.