miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 135035 0.66 0.958685
Target:  5'- nGGCg--GCgAGGCCGACGCcUGCGgCGg -3'
miRNA:   3'- aCCGugaCG-UCUGGCUGUGuAUGU-GC- -5'
23819 3' -53.3 NC_005261.1 + 10265 0.66 0.9548
Target:  5'- cUGGCGCcuucUGCccugaGGACUGGCGCcccgACGCGc -3'
miRNA:   3'- -ACCGUG----ACG-----UCUGGCUGUGua--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 93897 0.66 0.9548
Target:  5'- cGGUcgccagcgACUGCGGGCgCGGCGCc--CGCGg -3'
miRNA:   3'- aCCG--------UGACGUCUG-GCUGUGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 69514 0.66 0.9548
Target:  5'- cGGCggGCUGcCGGAgCUGGCGCGgGCGCu -3'
miRNA:   3'- aCCG--UGAC-GUCU-GGCUGUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 3401 0.66 0.950248
Target:  5'- cGGCACUuccgccgGCGGGCUGAagaGC--GCGCGg -3'
miRNA:   3'- aCCGUGA-------CGUCUGGCUg--UGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 93683 0.66 0.950674
Target:  5'- cGGCGCcgGCGGggcGCCGGCGgGUGC-Cu -3'
miRNA:   3'- aCCGUGa-CGUC---UGGCUGUgUAUGuGc -5'
23819 3' -53.3 NC_005261.1 + 77915 0.66 0.962334
Target:  5'- aGGUgagccaGCUGCGGGCCGGCuACcccUACGg -3'
miRNA:   3'- aCCG------UGACGUCUGGCUG-UGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 72933 0.66 0.965754
Target:  5'- gGGUgucGC-GCAGcGCCGGCGCcgGCACc -3'
miRNA:   3'- aCCG---UGaCGUC-UGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 49081 0.66 0.958685
Target:  5'- gGGCACgcgccGCGGGCCcGCugAgcGCGCGc -3'
miRNA:   3'- aCCGUGa----CGUCUGGcUGugUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 89082 0.67 0.941688
Target:  5'- cUGGUaccgGCUGCGGcCCGgGCGCGcugGCGCGc -3'
miRNA:   3'- -ACCG----UGACGUCuGGC-UGUGUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 119625 0.67 0.925782
Target:  5'- cGuGCACUGCGGcgugGCCGACAacgccacCGgcgGCGCGc -3'
miRNA:   3'- aC-CGUGACGUC----UGGCUGU-------GUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 71856 0.67 0.926333
Target:  5'- cUGGCGCucgcgccgcuUGCGGuCCGcccGCGCGgGCACGa -3'
miRNA:   3'- -ACCGUG----------ACGUCuGGC---UGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 10350 0.67 0.926333
Target:  5'- cGGCucgGCGuuugucacGGCCGACACGcGCGCGc -3'
miRNA:   3'- aCCGugaCGU--------CUGGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 27359 0.67 0.926333
Target:  5'- cGGCGC--CGGACCGGCGCGagGC-CGg -3'
miRNA:   3'- aCCGUGacGUCUGGCUGUGUa-UGuGC- -5'
23819 3' -53.3 NC_005261.1 + 103506 0.67 0.941688
Target:  5'- cGGCGCcGCGGA-CGGCgGCGUcCGCGg -3'
miRNA:   3'- aCCGUGaCGUCUgGCUG-UGUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75112 0.67 0.931178
Target:  5'- cUGGUaccgcacGCUGCaAGACCGGCugAU-CGCc -3'
miRNA:   3'- -ACCG-------UGACG-UCUGGCUGugUAuGUGc -5'
23819 3' -53.3 NC_005261.1 + 88192 0.67 0.941688
Target:  5'- cGGCGCcggcgagGCGGGCCG-CGCcgGCAa- -3'
miRNA:   3'- aCCGUGa------CGUCUGGCuGUGuaUGUgc -5'
23819 3' -53.3 NC_005261.1 + 97155 0.67 0.941688
Target:  5'- cUGGCGCcgGCccGGCCGGCugGguCGCGg -3'
miRNA:   3'- -ACCGUGa-CGu-CUGGCUGugUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 97233 0.67 0.941688
Target:  5'- cUGGCGCcgGCccGGCCGGCugGguCGCGg -3'
miRNA:   3'- -ACCGUGa-CGu-CUGGCUGugUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 15746 0.67 0.941688
Target:  5'- -cGCGC-GCAGGCCGACcgccucgccGCgAUACACa -3'
miRNA:   3'- acCGUGaCGUCUGGCUG---------UG-UAUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.