Results 41 - 60 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23819 | 3' | -53.3 | NC_005261.1 | + | 70887 | 0.71 | 0.760751 |
Target: 5'- cGGCGgUGCAcauGGCCGuGCACuUGCGCGc -3' miRNA: 3'- aCCGUgACGU---CUGGC-UGUGuAUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 132387 | 0.71 | 0.750902 |
Target: 5'- cGGCGCUGUuccccgAGGCCGcCGCcgACGCc -3' miRNA: 3'- aCCGUGACG------UCUGGCuGUGuaUGUGc -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 83138 | 0.71 | 0.750902 |
Target: 5'- cGGCACgcccUGCAgGugCGGCAgGUACugGc -3' miRNA: 3'- aCCGUG----ACGU-CugGCUGUgUAUGugC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 44882 | 0.71 | 0.750902 |
Target: 5'- cGaGCGCcGCGGggaugGCCGGgGCGUACACGg -3' miRNA: 3'- aC-CGUGaCGUC-----UGGCUgUGUAUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 136572 | 0.7 | 0.798841 |
Target: 5'- aGGCGCggGUGGGCgGGCGCAgagACGCc -3' miRNA: 3'- aCCGUGa-CGUCUGgCUGUGUa--UGUGc -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 95661 | 0.7 | 0.834387 |
Target: 5'- cGGCGCcGCgacgggcgcgGGugUGAgCACGUGCACGa -3' miRNA: 3'- aCCGUGaCG----------UCugGCU-GUGUAUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 17462 | 0.7 | 0.834387 |
Target: 5'- gGGgaaACUGCGGGCaGACGCGgGCGCGc -3' miRNA: 3'- aCCg--UGACGUCUGgCUGUGUaUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 24925 | 0.7 | 0.834387 |
Target: 5'- cGGCgGCUGCAGccGCCGAgggGCAggcugGCACGg -3' miRNA: 3'- aCCG-UGACGUC--UGGCUg--UGUa----UGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 136601 | 0.7 | 0.825771 |
Target: 5'- cGGCGCaGCguGGAgCGGCGCGcGCGCGc -3' miRNA: 3'- aCCGUGaCG--UCUgGCUGUGUaUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 55178 | 0.7 | 0.825771 |
Target: 5'- cGGCucGCgggGCGGAUCGGCGCAcggcguaGCGCGg -3' miRNA: 3'- aCCG--UGa--CGUCUGGCUGUGUa------UGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 75811 | 0.7 | 0.825771 |
Target: 5'- cGGCacGCUGguGcCCGGCGCGgcCGCGc -3' miRNA: 3'- aCCG--UGACguCuGGCUGUGUauGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 12641 | 0.7 | 0.807989 |
Target: 5'- cGGCGCgGUcugGGGCCG-CGCcgGCGCGa -3' miRNA: 3'- aCCGUGaCG---UCUGGCuGUGuaUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 89119 | 0.7 | 0.807989 |
Target: 5'- gUGGCACUGCGcgcGCCGGaGCAgcACGCGa -3' miRNA: 3'- -ACCGUGACGUc--UGGCUgUGUa-UGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 32179 | 0.7 | 0.807989 |
Target: 5'- cUGGC-CUGCGGG-CGGCGCGcGCugGa -3' miRNA: 3'- -ACCGuGACGUCUgGCUGUGUaUGugC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 81533 | 0.7 | 0.798841 |
Target: 5'- aGGCGCUGCAgGACCGcguagaGCAgcgagaACACGu -3' miRNA: 3'- aCCGUGACGU-CUGGCug----UGUa-----UGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 122133 | 0.7 | 0.797918 |
Target: 5'- aGGUACUGCAGgugguggugcacgGCCGACGCcaGCuCGa -3' miRNA: 3'- aCCGUGACGUC-------------UGGCUGUGuaUGuGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 29962 | 0.69 | 0.842808 |
Target: 5'- aGGCGCUagaggcggcGCGGugCGcCGCcgGCGCGu -3' miRNA: 3'- aCCGUGA---------CGUCugGCuGUGuaUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 37184 | 0.69 | 0.842808 |
Target: 5'- gGGCGCUGCuGG-CGGCGC-UGCugGc -3' miRNA: 3'- aCCGUGACGuCUgGCUGUGuAUGugC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 39800 | 0.69 | 0.842808 |
Target: 5'- cGGCGCgGCc-GCCGGCGCcaggcucuggccGUACACGg -3' miRNA: 3'- aCCGUGaCGucUGGCUGUG------------UAUGUGC- -5' |
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23819 | 3' | -53.3 | NC_005261.1 | + | 135459 | 0.69 | 0.842808 |
Target: 5'- gGGCGCUGCgGGACCucgUAC-UGCGCGg -3' miRNA: 3'- aCCGUGACG-UCUGGcu-GUGuAUGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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