miRNA display CGI


Results 41 - 60 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 58472 0.71 0.770479
Target:  5'- gGGCGCguaugagccGCAGGCCGGCGCGcggccgcuuUugGCGc -3'
miRNA:   3'- aCCGUGa--------CGUCUGGCUGUGU---------AugUGC- -5'
23819 3' -53.3 NC_005261.1 + 124073 0.71 0.770479
Target:  5'- cGGCcgACUGCAGcCCGGCGCc--CGCGu -3'
miRNA:   3'- aCCG--UGACGUCuGGCUGUGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 54855 0.71 0.780077
Target:  5'- cGGCGCcGCAGGCUGA-ACccGCACGg -3'
miRNA:   3'- aCCGUGaCGUCUGGCUgUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 82184 0.71 0.780077
Target:  5'- aGGCGCggcgugcGCAGAagccguugugcaCCGcCACGUACACGu -3'
miRNA:   3'- aCCGUGa------CGUCU------------GGCuGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 122133 0.7 0.797918
Target:  5'- aGGUACUGCAGgugguggugcacgGCCGACGCcaGCuCGa -3'
miRNA:   3'- aCCGUGACGUC-------------UGGCUGUGuaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 136572 0.7 0.798841
Target:  5'- aGGCGCggGUGGGCgGGCGCAgagACGCc -3'
miRNA:   3'- aCCGUGa-CGUCUGgCUGUGUa--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 81533 0.7 0.798841
Target:  5'- aGGCGCUGCAgGACCGcguagaGCAgcgagaACACGu -3'
miRNA:   3'- aCCGUGACGU-CUGGCug----UGUa-----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 32179 0.7 0.807989
Target:  5'- cUGGC-CUGCGGG-CGGCGCGcGCugGa -3'
miRNA:   3'- -ACCGuGACGUCUgGCUGUGUaUGugC- -5'
23819 3' -53.3 NC_005261.1 + 89119 0.7 0.807989
Target:  5'- gUGGCACUGCGcgcGCCGGaGCAgcACGCGa -3'
miRNA:   3'- -ACCGUGACGUc--UGGCUgUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 12641 0.7 0.807989
Target:  5'- cGGCGCgGUcugGGGCCG-CGCcgGCGCGa -3'
miRNA:   3'- aCCGUGaCG---UCUGGCuGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75811 0.7 0.825771
Target:  5'- cGGCacGCUGguGcCCGGCGCGgcCGCGc -3'
miRNA:   3'- aCCG--UGACguCuGGCUGUGUauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 55178 0.7 0.825771
Target:  5'- cGGCucGCgggGCGGAUCGGCGCAcggcguaGCGCGg -3'
miRNA:   3'- aCCG--UGa--CGUCUGGCUGUGUa------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 136601 0.7 0.825771
Target:  5'- cGGCGCaGCguGGAgCGGCGCGcGCGCGc -3'
miRNA:   3'- aCCGUGaCG--UCUgGCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 24925 0.7 0.834387
Target:  5'- cGGCgGCUGCAGccGCCGAgggGCAggcugGCACGg -3'
miRNA:   3'- aCCG-UGACGUC--UGGCUg--UGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 17462 0.7 0.834387
Target:  5'- gGGgaaACUGCGGGCaGACGCGgGCGCGc -3'
miRNA:   3'- aCCg--UGACGUCUGgCUGUGUaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 95661 0.7 0.834387
Target:  5'- cGGCGCcGCgacgggcgcgGGugUGAgCACGUGCACGa -3'
miRNA:   3'- aCCGUGaCG----------UCugGCU-GUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 29962 0.69 0.842808
Target:  5'- aGGCGCUagaggcggcGCGGugCGcCGCcgGCGCGu -3'
miRNA:   3'- aCCGUGA---------CGUCugGCuGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 37184 0.69 0.842808
Target:  5'- gGGCGCUGCuGG-CGGCGC-UGCugGc -3'
miRNA:   3'- aCCGUGACGuCUgGCUGUGuAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 39800 0.69 0.842808
Target:  5'- cGGCGCgGCc-GCCGGCGCcaggcucuggccGUACACGg -3'
miRNA:   3'- aCCGUGaCGucUGGCUGUG------------UAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 135459 0.69 0.842808
Target:  5'- gGGCGCUGCgGGACCucgUAC-UGCGCGg -3'
miRNA:   3'- aCCGUGACG-UCUGGcu-GUGuAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.