miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 63337 0.73 0.637465
Target:  5'- gUGGCGCUGCgAGGCCcACGgGUuCACGg -3'
miRNA:   3'- -ACCGUGACG-UCUGGcUGUgUAuGUGC- -5'
23819 3' -53.3 NC_005261.1 + 5123 0.73 0.658492
Target:  5'- cGGCGCggGCGGcccGCCGGCGCucGCGCGc -3'
miRNA:   3'- aCCGUGa-CGUC---UGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 118495 0.73 0.658492
Target:  5'- cGGCGCUGCGGACCcuGGCGCc-GCuCGg -3'
miRNA:   3'- aCCGUGACGUCUGG--CUGUGuaUGuGC- -5'
23819 3' -53.3 NC_005261.1 + 128821 0.73 0.658492
Target:  5'- -cGCGCUGCGG-CUGACGCucGCGCGg -3'
miRNA:   3'- acCGUGACGUCuGGCUGUGuaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 80083 0.73 0.668977
Target:  5'- gGGgAC-GCGGACCGGCGCGcGCGCc -3'
miRNA:   3'- aCCgUGaCGUCUGGCUGUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 3925 0.73 0.67943
Target:  5'- cGGCGCcggccuccggGUAGGCCaugGGCGCGUACGCGc -3'
miRNA:   3'- aCCGUGa---------CGUCUGG---CUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 90447 0.73 0.67943
Target:  5'- cGcGCGCUGCAcuuuGugCGcgcGCACGUGCGCGa -3'
miRNA:   3'- aC-CGUGACGU----CugGC---UGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3449 0.73 0.67943
Target:  5'- gGGCGC-GCGGGCCGcCGCGccGCGCGu -3'
miRNA:   3'- aCCGUGaCGUCUGGCuGUGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 53115 0.73 0.67943
Target:  5'- cGGCGCUGCGcGCCGccaacaggGCGgCGUACGCGc -3'
miRNA:   3'- aCCGUGACGUcUGGC--------UGU-GUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 60152 0.72 0.720734
Target:  5'- aGGCGCUGCAGgcGCCGcugccguggaaGCGCGUcuGCGCc -3'
miRNA:   3'- aCCGUGACGUC--UGGC-----------UGUGUA--UGUGc -5'
23819 3' -53.3 NC_005261.1 + 4016 0.72 0.730884
Target:  5'- aUGGcCAC-GCAGGCCGcCACGUGCGg- -3'
miRNA:   3'- -ACC-GUGaCGUCUGGCuGUGUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 135008 0.72 0.730884
Target:  5'- cUGGCGCgGCGGGCCcGCACGcggcCGCGg -3'
miRNA:   3'- -ACCGUGaCGUCUGGcUGUGUau--GUGC- -5'
23819 3' -53.3 NC_005261.1 + 90781 0.72 0.730884
Target:  5'- aGGcCGCUGCGGcgGCCGGCgcgcgcuaccGCGUGCGCu -3'
miRNA:   3'- aCC-GUGACGUC--UGGCUG----------UGUAUGUGc -5'
23819 3' -53.3 NC_005261.1 + 76419 0.72 0.730884
Target:  5'- cGGCGCgUGCAGagcGCCGGCGCcauggcggACGCGc -3'
miRNA:   3'- aCCGUG-ACGUC---UGGCUGUGua------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 3860 0.72 0.740943
Target:  5'- cGGCGCcGCGcGGCCGGCGa--GCACGg -3'
miRNA:   3'- aCCGUGaCGU-CUGGCUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 44882 0.71 0.750902
Target:  5'- cGaGCGCcGCGGggaugGCCGGgGCGUACACGg -3'
miRNA:   3'- aC-CGUGaCGUC-----UGGCUgUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 83138 0.71 0.750902
Target:  5'- cGGCACgcccUGCAgGugCGGCAgGUACugGc -3'
miRNA:   3'- aCCGUG----ACGU-CugGCUGUgUAUGugC- -5'
23819 3' -53.3 NC_005261.1 + 132387 0.71 0.750902
Target:  5'- cGGCGCUGUuccccgAGGCCGcCGCcgACGCc -3'
miRNA:   3'- aCCGUGACG------UCUGGCuGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 70887 0.71 0.760751
Target:  5'- cGGCGgUGCAcauGGCCGuGCACuUGCGCGc -3'
miRNA:   3'- aCCGUgACGU---CUGGC-UGUGuAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 122043 0.71 0.769512
Target:  5'- cGGCACUGCGcgcggauGGCCGAgAuCAUGUACGg -3'
miRNA:   3'- aCCGUGACGU-------CUGGCUgU-GUAUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.