miRNA display CGI


Results 21 - 40 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23819 3' -53.3 NC_005261.1 + 135278 0.66 0.958685
Target:  5'- nGGcCugUGCAGAaCGGCGgGUuccGCGCGa -3'
miRNA:   3'- aCC-GugACGUCUgGCUGUgUA---UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 48195 0.66 0.958685
Target:  5'- gGGCAaacagggcGCGGGCCGGCGCGcguuucagaGCGCGc -3'
miRNA:   3'- aCCGUga------CGUCUGGCUGUGUa--------UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 134770 0.66 0.958685
Target:  5'- cGGCAUgGCGGACC-ACGagaGCGCGa -3'
miRNA:   3'- aCCGUGaCGUCUGGcUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 135035 0.66 0.958685
Target:  5'- nGGCg--GCgAGGCCGACGCcUGCGgCGg -3'
miRNA:   3'- aCCGugaCG-UCUGGCUGUGuAUGU-GC- -5'
23819 3' -53.3 NC_005261.1 + 51477 0.66 0.958685
Target:  5'- cUGGCGCUGaucACCGGCGCc-GCGCc -3'
miRNA:   3'- -ACCGUGACgucUGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 119221 0.66 0.957544
Target:  5'- aUGGCcCUGCcggggcgagcguGGCCGAUcgcggccaucuucGCAUGCGCGc -3'
miRNA:   3'- -ACCGuGACGu-----------CUGGCUG-------------UGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 53721 0.66 0.9548
Target:  5'- cGGCcaGCUGCGGcgcGCCcGCACGggcgaGCACGu -3'
miRNA:   3'- aCCG--UGACGUC---UGGcUGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 93897 0.66 0.9548
Target:  5'- cGGUcgccagcgACUGCGGGCgCGGCGCc--CGCGg -3'
miRNA:   3'- aCCG--------UGACGUCUG-GCUGUGuauGUGC- -5'
23819 3' -53.3 NC_005261.1 + 10265 0.66 0.9548
Target:  5'- cUGGCGCcuucUGCccugaGGACUGGCGCcccgACGCGc -3'
miRNA:   3'- -ACCGUG----ACG-----UCUGGCUGUGua--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 69514 0.66 0.9548
Target:  5'- cGGCggGCUGcCGGAgCUGGCGCGgGCGCu -3'
miRNA:   3'- aCCG--UGAC-GUCU-GGCUGUGUaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 45630 0.66 0.954398
Target:  5'- cGGCGCgGCGGGCCcGCGCcggagcaGUGCccaGCGg -3'
miRNA:   3'- aCCGUGaCGUCUGGcUGUG-------UAUG---UGC- -5'
23819 3' -53.3 NC_005261.1 + 137036 0.66 0.954398
Target:  5'- cGGCGuCgguggaggGCGGACCGucggcagGCGCGgagGCGCGg -3'
miRNA:   3'- aCCGU-Ga-------CGUCUGGC-------UGUGUa--UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 88767 0.66 0.954398
Target:  5'- cGGCGCUGCgcuccucggcccuGGccGCCGGCGCc-GCGCa -3'
miRNA:   3'- aCCGUGACG-------------UC--UGGCUGUGuaUGUGc -5'
23819 3' -53.3 NC_005261.1 + 84698 0.66 0.950674
Target:  5'- cGGCGC-GCGGGCaCGcgaGCACAaagcgGCGCGu -3'
miRNA:   3'- aCCGUGaCGUCUG-GC---UGUGUa----UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 75409 0.66 0.950674
Target:  5'- gGGCGCgGC---CCGGCGCGUGCAg- -3'
miRNA:   3'- aCCGUGaCGucuGGCUGUGUAUGUgc -5'
23819 3' -53.3 NC_005261.1 + 105573 0.66 0.950674
Target:  5'- aGGUAC-GCguagaGGGCCucggGGCGCGUGCGCGc -3'
miRNA:   3'- aCCGUGaCG-----UCUGG----CUGUGUAUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 76868 0.66 0.950674
Target:  5'- cUGGCGCccgGCgaggAGGCCGACG---GCACGc -3'
miRNA:   3'- -ACCGUGa--CG----UCUGGCUGUguaUGUGC- -5'
23819 3' -53.3 NC_005261.1 + 108895 0.66 0.950674
Target:  5'- -cGCGCUGCccGCCGGCgaGCGggGCGCGg -3'
miRNA:   3'- acCGUGACGucUGGCUG--UGUa-UGUGC- -5'
23819 3' -53.3 NC_005261.1 + 93683 0.66 0.950674
Target:  5'- cGGCGCcgGCGGggcGCCGGCGgGUGC-Cu -3'
miRNA:   3'- aCCGUGa-CGUC---UGGCUGUgUAUGuGc -5'
23819 3' -53.3 NC_005261.1 + 112125 0.66 0.950674
Target:  5'- cGGCGCUGU--ACCGGCAgcuaguCGUGCccGCGa -3'
miRNA:   3'- aCCGUGACGucUGGCUGU------GUAUG--UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.