miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23821 5' -55.3 NC_005261.1 + 65807 0.81 0.198646
Target:  5'- cGGGuCGGGGUGcccGGGCGGCGGCGCGa -3'
miRNA:   3'- aCUC-GCUCCACaa-CUCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 60065 0.77 0.322975
Target:  5'- aGAGCGgcggccgguccgcGGGcUGcgUGGGCAGCAGCACGc -3'
miRNA:   3'- aCUCGC-------------UCC-ACa-ACUCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 136082 0.77 0.323727
Target:  5'- -aGGCGAGGaggUGAGCGGCAGCAUu -3'
miRNA:   3'- acUCGCUCCacaACUCGUCGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 27256 0.77 0.346885
Target:  5'- gGGGCGGGGUGUgcGGGCAGCccGGC-CGg -3'
miRNA:   3'- aCUCGCUCCACAa-CUCGUCG--UCGuGC- -5'
23821 5' -55.3 NC_005261.1 + 126949 0.74 0.469746
Target:  5'- gGGGCGccGGGcGcggGGGCGGCAGCGCGa -3'
miRNA:   3'- aCUCGC--UCCaCaa-CUCGUCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 128085 0.74 0.479364
Target:  5'- cGAGCGAGcGgGUUaacGGGCgAGCGGCGCGg -3'
miRNA:   3'- aCUCGCUC-CaCAA---CUCG-UCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 74287 0.73 0.498882
Target:  5'- cGGGCGGGGcgGUcgccgccGGGCAGCAGaCGCGa -3'
miRNA:   3'- aCUCGCUCCa-CAa------CUCGUCGUC-GUGC- -5'
23821 5' -55.3 NC_005261.1 + 105867 0.73 0.518745
Target:  5'- -cGGCGAuGcgGUUGGGCAGguGCACGa -3'
miRNA:   3'- acUCGCUcCa-CAACUCGUCguCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 18788 0.73 0.538915
Target:  5'- -cGGCGAGGgugccgGcUUGAGCGGCGGCGgGc -3'
miRNA:   3'- acUCGCUCCa-----C-AACUCGUCGUCGUgC- -5'
23821 5' -55.3 NC_005261.1 + 81969 0.73 0.5491
Target:  5'- -cAGCGcGGUGUUcGGCGGCuGCGCGa -3'
miRNA:   3'- acUCGCuCCACAAcUCGUCGuCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 26875 0.73 0.5491
Target:  5'- gGGGCGGGGguggGUggggggGGGCGGgGGCGCa -3'
miRNA:   3'- aCUCGCUCCa---CAa-----CUCGUCgUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 137405 0.72 0.579985
Target:  5'- gGAGCGAGGgag-GAGCGaaAGCACGc -3'
miRNA:   3'- aCUCGCUCCacaaCUCGUcgUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 76185 0.71 0.61122
Target:  5'- cGAGCGGGGccugggcgUGcUGAuGCAGCAGcCGCGc -3'
miRNA:   3'- aCUCGCUCC--------ACaACU-CGUCGUC-GUGC- -5'
23821 5' -55.3 NC_005261.1 + 104666 0.71 0.61122
Target:  5'- -uGGCGGGcGUGUgcuGCGGCAGCGCc -3'
miRNA:   3'- acUCGCUC-CACAacuCGUCGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 63042 0.71 0.61122
Target:  5'- -cGGCGAGGcgGUcGcGCAGCAGCGCc -3'
miRNA:   3'- acUCGCUCCa-CAaCuCGUCGUCGUGc -5'
23821 5' -55.3 NC_005261.1 + 46776 0.71 0.6154
Target:  5'- gGAGCGAGGgcUUGAGCcccgggcgcccgucGCGGCGCGc -3'
miRNA:   3'- aCUCGCUCCacAACUCGu-------------CGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 109669 0.71 0.621675
Target:  5'- cGAGCGcGGGUGcUGAGCGGacgaGGgACGa -3'
miRNA:   3'- aCUCGC-UCCACaACUCGUCg---UCgUGC- -5'
23821 5' -55.3 NC_005261.1 + 134892 0.71 0.632137
Target:  5'- cUGuGCGuucGGUGgugGAGCGGguGCGCa -3'
miRNA:   3'- -ACuCGCu--CCACaa-CUCGUCguCGUGc -5'
23821 5' -55.3 NC_005261.1 + 97749 0.71 0.6426
Target:  5'- gGGGCGGGGc---GGGCucGGCGGCGCGg -3'
miRNA:   3'- aCUCGCUCCacaaCUCG--UCGUCGUGC- -5'
23821 5' -55.3 NC_005261.1 + 45944 0.7 0.671822
Target:  5'- cGcGCGAGGgccgccagggcgccGUUGAGCAugcgcgccagcucuuGCAGCACGg -3'
miRNA:   3'- aCuCGCUCCa-------------CAACUCGU---------------CGUCGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.