Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23821 | 5' | -55.3 | NC_005261.1 | + | 376 | 0.66 | 0.876947 |
Target: 5'- -uGGCGGcGGUGgc-GGCGGCGGCGgCGg -3' miRNA: 3'- acUCGCU-CCACaacUCGUCGUCGU-GC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 532 | 0.66 | 0.910664 |
Target: 5'- cGGGCGGGGggcaGGGCGGaCGGCGg- -3' miRNA: 3'- aCUCGCUCCacaaCUCGUC-GUCGUgc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 1006 | 0.69 | 0.764841 |
Target: 5'- gGGGCGGGGggcGggGGGCGGguGgGCu -3' miRNA: 3'- aCUCGCUCCa--CaaCUCGUCguCgUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 1294 | 0.66 | 0.897898 |
Target: 5'- -cGGCGGGGcucccGUcGccGGCGGCGGCACGc -3' miRNA: 3'- acUCGCUCCa----CAaC--UCGUCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 2090 | 0.68 | 0.811512 |
Target: 5'- -aGGCcAGGUcccgcGUcgcGAGCAGCAGCACGc -3' miRNA: 3'- acUCGcUCCA-----CAa--CUCGUCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 5386 | 0.66 | 0.884165 |
Target: 5'- gGAGgGAGGgagGgaGAGCGagAGCGCGg -3' miRNA: 3'- aCUCgCUCCa--CaaCUCGUcgUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 11432 | 0.66 | 0.884874 |
Target: 5'- cGGGCGGGGg---GGGCGGCGGaagagggaaaaagaaGCGg -3' miRNA: 3'- aCUCGCUCCacaaCUCGUCGUCg--------------UGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 13294 | 0.68 | 0.802482 |
Target: 5'- gGGGCGcAGGUGUgcgacggGGGCcucguacGCAGCGCc -3' miRNA: 3'- aCUCGC-UCCACAa------CUCGu------CGUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 13593 | 0.67 | 0.840892 |
Target: 5'- aGAGCGugaaggagucgcccgGGGUGUacacgUGGG-AGCGGUACGg -3' miRNA: 3'- aCUCGC---------------UCCACA-----ACUCgUCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 14321 | 0.66 | 0.876947 |
Target: 5'- gGAGCGAcGGc----GGCAGCAGCAgCGg -3' miRNA: 3'- aCUCGCU-CCacaacUCGUCGUCGU-GC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 14959 | 0.66 | 0.89115 |
Target: 5'- cGAGCGGGcGUGccugGGGCGaCuGCGCGg -3' miRNA: 3'- aCUCGCUC-CACaa--CUCGUcGuCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 15969 | 0.69 | 0.735283 |
Target: 5'- cGGGCGGGGgagGgcccGGGCcgcucacccgGGCAGCGCGc -3' miRNA: 3'- aCUCGCUCCa--Caa--CUCG----------UCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 16187 | 0.66 | 0.910664 |
Target: 5'- -uGGCGGGGg--UGGGCGGgGGcCGCGu -3' miRNA: 3'- acUCGCUCCacaACUCGUCgUC-GUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 18122 | 0.66 | 0.89115 |
Target: 5'- cGAGCGGGGg---GaAGCAGCcGCAgGc -3' miRNA: 3'- aCUCGCUCCacaaC-UCGUCGuCGUgC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 18788 | 0.73 | 0.538915 |
Target: 5'- -cGGCGAGGgugccgGcUUGAGCGGCGGCGgGc -3' miRNA: 3'- acUCGCUCCa-----C-AACUCGUCGUCGUgC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 19948 | 0.7 | 0.684277 |
Target: 5'- cUGGGCGGGG-GUgGGGCGGCcucGGCuGCGg -3' miRNA: 3'- -ACUCGCUCCaCAaCUCGUCG---UCG-UGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 23259 | 0.66 | 0.897898 |
Target: 5'- cGGGCGAGagcu---GCAGCAGCGCc -3' miRNA: 3'- aCUCGCUCcacaacuCGUCGUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 26875 | 0.73 | 0.5491 |
Target: 5'- gGGGCGGGGguggGUggggggGGGCGGgGGCGCa -3' miRNA: 3'- aCUCGCUCCa---CAa-----CUCGUCgUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 27256 | 0.77 | 0.346885 |
Target: 5'- gGGGCGGGGUGUgcGGGCAGCccGGC-CGg -3' miRNA: 3'- aCUCGCUCCACAa-CUCGUCG--UCGuGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 32912 | 0.68 | 0.820373 |
Target: 5'- gGGGCGcGcGUGggGGGCGGCGG-GCGg -3' miRNA: 3'- aCUCGCuC-CACaaCUCGUCGUCgUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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