Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23821 | 5' | -55.3 | NC_005261.1 | + | 138203 | 0.66 | 0.910664 |
Target: 5'- cGGGCGGGGggcaGGGCGGaCGGCGg- -3' miRNA: 3'- aCUCGCUCCacaaCUCGUC-GUCGUgc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 76185 | 0.71 | 0.61122 |
Target: 5'- cGAGCGGGGccugggcgUGcUGAuGCAGCAGcCGCGc -3' miRNA: 3'- aCUCGCUCC--------ACaACU-CGUCGUC-GUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 104666 | 0.71 | 0.61122 |
Target: 5'- -uGGCGGGcGUGUgcuGCGGCAGCGCc -3' miRNA: 3'- acUCGCUC-CACAacuCGUCGUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 63042 | 0.71 | 0.61122 |
Target: 5'- -cGGCGAGGcgGUcGcGCAGCAGCGCc -3' miRNA: 3'- acUCGCUCCa-CAaCuCGUCGUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 46776 | 0.71 | 0.6154 |
Target: 5'- gGAGCGAGGgcUUGAGCcccgggcgcccgucGCGGCGCGc -3' miRNA: 3'- aCUCGCUCCacAACUCGu-------------CGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 109669 | 0.71 | 0.621675 |
Target: 5'- cGAGCGcGGGUGcUGAGCGGacgaGGgACGa -3' miRNA: 3'- aCUCGC-UCCACaACUCGUCg---UCgUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 134892 | 0.71 | 0.632137 |
Target: 5'- cUGuGCGuucGGUGgugGAGCGGguGCGCa -3' miRNA: 3'- -ACuCGCu--CCACaa-CUCGUCguCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 97749 | 0.71 | 0.6426 |
Target: 5'- gGGGCGGGGc---GGGCucGGCGGCGCGg -3' miRNA: 3'- aCUCGCUCCacaaCUCG--UCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 45944 | 0.7 | 0.671822 |
Target: 5'- cGcGCGAGGgccgccagggcgccGUUGAGCAugcgcgccagcucuuGCAGCACGg -3' miRNA: 3'- aCuCGCUCCa-------------CAACUCGU---------------CGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 137405 | 0.72 | 0.579985 |
Target: 5'- gGAGCGAGGgag-GAGCGaaAGCACGc -3' miRNA: 3'- aCUCGCUCCacaaCUCGUcgUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 81969 | 0.73 | 0.5491 |
Target: 5'- -cAGCGcGGUGUUcGGCGGCuGCGCGa -3' miRNA: 3'- acUCGCuCCACAAcUCGUCGuCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 26875 | 0.73 | 0.5491 |
Target: 5'- gGGGCGGGGguggGUggggggGGGCGGgGGCGCa -3' miRNA: 3'- aCUCGCUCCa---CAa-----CUCGUCgUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 60065 | 0.77 | 0.322975 |
Target: 5'- aGAGCGgcggccgguccgcGGGcUGcgUGGGCAGCAGCACGc -3' miRNA: 3'- aCUCGC-------------UCC-ACa-ACUCGUCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 136082 | 0.77 | 0.323727 |
Target: 5'- -aGGCGAGGaggUGAGCGGCAGCAUu -3' miRNA: 3'- acUCGCUCCacaACUCGUCGUCGUGc -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 27256 | 0.77 | 0.346885 |
Target: 5'- gGGGCGGGGUGUgcGGGCAGCccGGC-CGg -3' miRNA: 3'- aCUCGCUCCACAa-CUCGUCG--UCGuGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 126949 | 0.74 | 0.469746 |
Target: 5'- gGGGCGccGGGcGcggGGGCGGCAGCGCGa -3' miRNA: 3'- aCUCGC--UCCaCaa-CUCGUCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 128085 | 0.74 | 0.479364 |
Target: 5'- cGAGCGAGcGgGUUaacGGGCgAGCGGCGCGg -3' miRNA: 3'- aCUCGCUC-CaCAA---CUCG-UCGUCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 74287 | 0.73 | 0.498882 |
Target: 5'- cGGGCGGGGcgGUcgccgccGGGCAGCAGaCGCGa -3' miRNA: 3'- aCUCGCUCCa-CAa------CUCGUCGUC-GUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 105867 | 0.73 | 0.518745 |
Target: 5'- -cGGCGAuGcgGUUGGGCAGguGCACGa -3' miRNA: 3'- acUCGCUcCa-CAACUCGUCguCGUGC- -5' |
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23821 | 5' | -55.3 | NC_005261.1 | + | 18788 | 0.73 | 0.538915 |
Target: 5'- -cGGCGAGGgugccgGcUUGAGCGGCGGCGgGc -3' miRNA: 3'- acUCGCUCCa-----C-AACUCGUCGUCGUgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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