miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23823 3' -56.1 NC_005261.1 + 30782 0.79 0.242972
Target:  5'- cCCGgCCGCGGcgGUGGAGGUGCUgggGCCGg -3'
miRNA:   3'- -GGCgGGCGCC--UAUUUCUACGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 29155 0.75 0.42895
Target:  5'- cCCGCCCGCGGAUcca---GCCaagGCCAg -3'
miRNA:   3'- -GGCGGGCGCCUAuuucuaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 131954 0.74 0.447072
Target:  5'- gCGCCCGUcuaccGGGUGGAGcUGCCgcgcgGCCAc -3'
miRNA:   3'- gGCGGGCG-----CCUAUUUCuACGGa----CGGU- -5'
23823 3' -56.1 NC_005261.1 + 135049 0.73 0.503834
Target:  5'- aCGCCUGCGGcgGcAGcgGCCcGCCGc -3'
miRNA:   3'- gGCGGGCGCCuaUuUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 58228 0.72 0.543353
Target:  5'- gCGCCCGCGGcgGcGGGguccucgGCCaUGCCGc -3'
miRNA:   3'- gGCGGGCGCCuaUuUCUa------CGG-ACGGU- -5'
23823 3' -56.1 NC_005261.1 + 3408 0.72 0.553399
Target:  5'- uCCGCCgGCGGGcUGAAGAgcgcGCggGCCAg -3'
miRNA:   3'- -GGCGGgCGCCU-AUUUCUa---CGgaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 2796 0.72 0.563498
Target:  5'- gCCGCCgGCGGccgGGAGggGCCgggcgGCCc -3'
miRNA:   3'- -GGCGGgCGCCua-UUUCuaCGGa----CGGu -5'
23823 3' -56.1 NC_005261.1 + 113134 0.72 0.563498
Target:  5'- cCCGCCgCGCGGcggcugaacGUGGAGAUcgccgagcGCCUGCUc -3'
miRNA:   3'- -GGCGG-GCGCC---------UAUUUCUA--------CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 1262 0.72 0.583836
Target:  5'- gUGCCCGgGGGUGAcuGUGCCggcGCCc -3'
miRNA:   3'- gGCGGGCgCCUAUUucUACGGa--CGGu -5'
23823 3' -56.1 NC_005261.1 + 84369 0.72 0.594061
Target:  5'- gCCGCCCGCGGGcucg---GCCUcgGCCGc -3'
miRNA:   3'- -GGCGGGCGCCUauuucuaCGGA--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 104362 0.71 0.604315
Target:  5'- gCCGCCCGCGaGAac-AGccGCCgGCCGg -3'
miRNA:   3'- -GGCGGGCGC-CUauuUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 59337 0.71 0.618703
Target:  5'- gCGCCCGcCGGGUcgccgccgucgccacGAGGGUGUCgcccGCCAg -3'
miRNA:   3'- gGCGGGC-GCCUA---------------UUUCUACGGa---CGGU- -5'
23823 3' -56.1 NC_005261.1 + 6239 0.71 0.624877
Target:  5'- gCGCCCGgGGAgg-----GCCUGCCc -3'
miRNA:   3'- gGCGGGCgCCUauuucuaCGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 28835 0.71 0.63517
Target:  5'- gCGgCCGCGGcUGAGGcgGCCgucgugGCCGc -3'
miRNA:   3'- gGCgGGCGCCuAUUUCuaCGGa-----CGGU- -5'
23823 3' -56.1 NC_005261.1 + 95003 0.71 0.645461
Target:  5'- cCCGCCCuGCGGGgcgggcuaUAAAGccGCC-GCCGg -3'
miRNA:   3'- -GGCGGG-CGCCU--------AUUUCuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 15649 0.71 0.649575
Target:  5'- gCCGCCCGgcCGGGagcuggugcuccagGAAGAUcaGCCUGCCc -3'
miRNA:   3'- -GGCGGGC--GCCUa-------------UUUCUA--CGGACGGu -5'
23823 3' -56.1 NC_005261.1 + 58338 0.7 0.655741
Target:  5'- aCCGCCuCGCGGAgccgc--GCCgGCCAg -3'
miRNA:   3'- -GGCGG-GCGCCUauuucuaCGGaCGGU- -5'
23823 3' -56.1 NC_005261.1 + 47610 0.7 0.706681
Target:  5'- gCCGCCCccuGCGGG---GGcgGCCgcgGCCGc -3'
miRNA:   3'- -GGCGGG---CGCCUauuUCuaCGGa--CGGU- -5'
23823 3' -56.1 NC_005261.1 + 54633 0.7 0.706681
Target:  5'- aCCGCCCGCGuGAUGAGcgcgcccgcGGUGUuaacgaauaugUUGCCGc -3'
miRNA:   3'- -GGCGGGCGC-CUAUUU---------CUACG-----------GACGGU- -5'
23823 3' -56.1 NC_005261.1 + 118251 0.69 0.716714
Target:  5'- gCCGUCUGCGGcGUGccGGUGCaCUGCg- -3'
miRNA:   3'- -GGCGGGCGCC-UAUuuCUACG-GACGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.