Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23823 | 3' | -56.1 | NC_005261.1 | + | 35446 | 0.66 | 0.899288 |
Target: 5'- cCCGcCCCGCGGGUcuaggcgcGgcgcgcgcgcgucccGGGGUcCCUGCCGc -3' miRNA: 3'- -GGC-GGGCGCCUA--------U---------------UUCUAcGGACGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 6239 | 0.71 | 0.624877 |
Target: 5'- gCGCCCGgGGAgg-----GCCUGCCc -3' miRNA: 3'- gGCGGGCgCCUauuucuaCGGACGGu -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 28835 | 0.71 | 0.63517 |
Target: 5'- gCGgCCGCGGcUGAGGcgGCCgucgugGCCGc -3' miRNA: 3'- gGCgGGCGCCuAUUUCuaCGGa-----CGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 95003 | 0.71 | 0.645461 |
Target: 5'- cCCGCCCuGCGGGgcgggcuaUAAAGccGCC-GCCGg -3' miRNA: 3'- -GGCGGG-CGCCU--------AUUUCuaCGGaCGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 15649 | 0.71 | 0.649575 |
Target: 5'- gCCGCCCGgcCGGGagcuggugcuccagGAAGAUcaGCCUGCCc -3' miRNA: 3'- -GGCGGGC--GCCUa-------------UUUCUA--CGGACGGu -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 58338 | 0.7 | 0.655741 |
Target: 5'- aCCGCCuCGCGGAgccgc--GCCgGCCAg -3' miRNA: 3'- -GGCGG-GCGCCUauuucuaCGGaCGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 47610 | 0.7 | 0.706681 |
Target: 5'- gCCGCCCccuGCGGG---GGcgGCCgcgGCCGc -3' miRNA: 3'- -GGCGGG---CGCCUauuUCuaCGGa--CGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 54633 | 0.7 | 0.706681 |
Target: 5'- aCCGCCCGCGuGAUGAGcgcgcccgcGGUGUuaacgaauaugUUGCCGc -3' miRNA: 3'- -GGCGGGCGC-CUAUUU---------CUACG-----------GACGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 127328 | 0.69 | 0.716714 |
Target: 5'- gCCGCCCGCGGGggccGGAGcgGCgggGCg- -3' miRNA: 3'- -GGCGGGCGCCUa---UUUCuaCGga-CGgu -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 59337 | 0.71 | 0.618703 |
Target: 5'- gCGCCCGcCGGGUcgccgccgucgccacGAGGGUGUCgcccGCCAg -3' miRNA: 3'- gGCGGGC-GCCUA---------------UUUCUACGGa---CGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 104362 | 0.71 | 0.604315 |
Target: 5'- gCCGCCCGCGaGAac-AGccGCCgGCCGg -3' miRNA: 3'- -GGCGGGCGC-CUauuUCuaCGGaCGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 84369 | 0.72 | 0.594061 |
Target: 5'- gCCGCCCGCGGGcucg---GCCUcgGCCGc -3' miRNA: 3'- -GGCGGGCGCCUauuucuaCGGA--CGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 29155 | 0.75 | 0.42895 |
Target: 5'- cCCGCCCGCGGAUcca---GCCaagGCCAg -3' miRNA: 3'- -GGCGGGCGCCUAuuucuaCGGa--CGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 131954 | 0.74 | 0.447072 |
Target: 5'- gCGCCCGUcuaccGGGUGGAGcUGCCgcgcgGCCAc -3' miRNA: 3'- gGCGGGCG-----CCUAUUUCuACGGa----CGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 135049 | 0.73 | 0.503834 |
Target: 5'- aCGCCUGCGGcgGcAGcgGCCcGCCGc -3' miRNA: 3'- gGCGGGCGCCuaUuUCuaCGGaCGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 58228 | 0.72 | 0.543353 |
Target: 5'- gCGCCCGCGGcgGcGGGguccucgGCCaUGCCGc -3' miRNA: 3'- gGCGGGCGCCuaUuUCUa------CGG-ACGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 3408 | 0.72 | 0.553399 |
Target: 5'- uCCGCCgGCGGGcUGAAGAgcgcGCggGCCAg -3' miRNA: 3'- -GGCGGgCGCCU-AUUUCUa---CGgaCGGU- -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 2796 | 0.72 | 0.563498 |
Target: 5'- gCCGCCgGCGGccgGGAGggGCCgggcgGCCc -3' miRNA: 3'- -GGCGGgCGCCua-UUUCuaCGGa----CGGu -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 113134 | 0.72 | 0.563498 |
Target: 5'- cCCGCCgCGCGGcggcugaacGUGGAGAUcgccgagcGCCUGCUc -3' miRNA: 3'- -GGCGG-GCGCC---------UAUUUCUA--------CGGACGGu -5' |
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23823 | 3' | -56.1 | NC_005261.1 | + | 1262 | 0.72 | 0.583836 |
Target: 5'- gUGCCCGgGGGUGAcuGUGCCggcGCCc -3' miRNA: 3'- gGCGGGCgCCUAUUucUACGGa--CGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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